Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_E07_e149_09.seq
(1530 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32169-3|AAC50215.1| 1629|Homo sapiens Pro-a2(XI) protein. 33 2.1
U32169-2|AAC50213.1| 1650|Homo sapiens Pro-a2(XI) protein. 33 2.1
U32169-1|AAC50214.1| 1736|Homo sapiens Pro-a2(XI) protein. 33 2.1
J04974-1|AAA52034.1| 961|Homo sapiens COL11A2 protein. 33 2.1
BX248309-1|CAM26005.1| 1622|Homo sapiens collagen, type XI, alph... 33 2.1
AL845446-3|CAI95551.1| 1650|Homo sapiens collagen, type XI, alph... 33 2.1
AL844527-6|CAI41834.1| 1650|Homo sapiens collagen, type XI, alph... 33 2.1
AL662824-16|CAI17611.2| 1650|Homo sapiens collagen, type XI, alp... 33 2.1
AL645940-2|CAI18063.2| 1650|Homo sapiens collagen type XI alpha ... 33 2.1
AL031228-16|CAA20240.1| 1736|Homo sapiens collagen type XI alpha... 33 2.1
AL031228-15|CAI95623.1| 1650|Homo sapiens collagen type XI alpha... 33 2.1
BT006702-1|AAP35348.1| 251|Homo sapiens RAB34, member RAS oncog... 33 3.7
BC091510-1|AAH91510.1| 259|Homo sapiens RAB34, member RAS oncog... 33 3.7
BC066904-1|AAH66904.1| 259|Homo sapiens RAB34 protein protein. 33 3.7
BC016841-1|AAH16841.1| 251|Homo sapiens RAB34 protein protein. 33 3.7
AK074689-1|BAC11141.1| 259|Homo sapiens protein ( Homo sapiens ... 33 3.7
AK027312-1|BAB55034.1| 259|Homo sapiens protein ( Homo sapiens ... 33 3.7
AJ277106-1|CAC81760.1| 259|Homo sapiens GTP-binding protein rah... 33 3.7
AF327350-1|AAL05587.1| 211|Homo sapiens Ras-related GTP-binding... 33 3.7
AF322067-1|AAK09397.1| 259|Homo sapiens RAB39 protein. 33 3.7
Z95116-3|CAI17988.1| 423|Homo sapiens protein ( Human DNA seque... 32 6.4
CR456407-1|CAG30293.1| 443|Homo sapiens bK984G1.1 protein. 32 6.4
BC046358-1|AAH46358.1| 443|Homo sapiens EMI domain containing 1... 32 6.4
AY056842-1|AAL17907.1| 123|Homo sapiens anti-HIV-1 gp120 immuno... 32 6.4
AL031186-3|CAI18002.1| 423|Homo sapiens protein ( Human DNA seq... 32 6.4
AJ416090-1|CAC94777.1| 441|Homo sapiens putative emu1 protein p... 32 6.4
AF304507-1|AAG25662.1| 104|Homo sapiens immunoglobulin heavy ch... 31 8.5
>U32169-3|AAC50215.1| 1629|Homo sapiens Pro-a2(XI) protein.
Length = 1629
Score = 33.5 bits (73), Expect = 2.1
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +3
Query: 1188 KKXTRGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPP 1337
K+ T+G P + G PAG G R P G P G P+ PP
Sbjct: 855 KEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP 904
>U32169-2|AAC50213.1| 1650|Homo sapiens Pro-a2(XI) protein.
Length = 1650
Score = 33.5 bits (73), Expect = 2.1
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +3
Query: 1188 KKXTRGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPP 1337
K+ T+G P + G PAG G R P G P G P+ PP
Sbjct: 876 KEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP 925
>U32169-1|AAC50214.1| 1736|Homo sapiens Pro-a2(XI) protein.
Length = 1736
Score = 33.5 bits (73), Expect = 2.1
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +3
Query: 1188 KKXTRGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPP 1337
K+ T+G P + G PAG G R P G P G P+ PP
Sbjct: 962 KEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP 1011
>J04974-1|AAA52034.1| 961|Homo sapiens COL11A2 protein.
Length = 961
Score = 33.5 bits (73), Expect = 2.1
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +3
Query: 1188 KKXTRGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPP 1337
K+ T+G P + G PAG G R P G P G P+ PP
Sbjct: 233 KEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP 282
>BX248309-1|CAM26005.1| 1622|Homo sapiens collagen, type XI, alpha 2
protein.
Length = 1622
Score = 33.5 bits (73), Expect = 2.1
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +3
Query: 1188 KKXTRGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPP 1337
K+ T+G P + G PAG G R P G P G P+ PP
Sbjct: 848 KEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP 897
>AL845446-3|CAI95551.1| 1650|Homo sapiens collagen, type XI, alpha 2
protein.
Length = 1650
Score = 33.5 bits (73), Expect = 2.1
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +3
Query: 1188 KKXTRGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPP 1337
K+ T+G P + G PAG G R P G P G P+ PP
Sbjct: 876 KEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP 925
>AL844527-6|CAI41834.1| 1650|Homo sapiens collagen, type XI, alpha 2
protein.
Length = 1650
Score = 33.5 bits (73), Expect = 2.1
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +3
Query: 1188 KKXTRGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPP 1337
K+ T+G P + G PAG G R P G P G P+ PP
Sbjct: 876 KEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP 925
>AL662824-16|CAI17611.2| 1650|Homo sapiens collagen, type XI, alpha 2
protein.
Length = 1650
Score = 33.5 bits (73), Expect = 2.1
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +3
Query: 1188 KKXTRGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPP 1337
K+ T+G P + G PAG G R P G P G P+ PP
Sbjct: 876 KEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP 925
>AL645940-2|CAI18063.2| 1650|Homo sapiens collagen type XI alpha 2
protein.
Length = 1650
Score = 33.5 bits (73), Expect = 2.1
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +3
Query: 1188 KKXTRGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPP 1337
K+ T+G P + G PAG G R P G P G P+ PP
Sbjct: 876 KEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP 925
>AL031228-16|CAA20240.1| 1736|Homo sapiens collagen type XI alpha 2
protein.
Length = 1736
Score = 33.5 bits (73), Expect = 2.1
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +3
Query: 1188 KKXTRGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPP 1337
K+ T+G P + G PAG G R P G P G P+ PP
Sbjct: 962 KEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP 1011
>AL031228-15|CAI95623.1| 1650|Homo sapiens collagen type XI alpha 2
protein.
Length = 1650
Score = 33.5 bits (73), Expect = 2.1
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +3
Query: 1188 KKXTRGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPP 1337
K+ T+G P + G PAG G R P G P G P+ PP
Sbjct: 876 KEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP 925
>BT006702-1|AAP35348.1| 251|Homo sapiens RAB34, member RAS oncogene
family protein.
Length = 251
Score = 32.7 bits (71), Expect = 3.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 349 DLSLGSRCFVNRFKIDLFDKSFSPSL 272
DLS+G C +NRF D FDK++ ++
Sbjct: 60 DLSVGKTCLINRFCKDTFDKNYKATI 85
>BC091510-1|AAH91510.1| 259|Homo sapiens RAB34, member RAS oncogene
family protein.
Length = 259
Score = 32.7 bits (71), Expect = 3.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 349 DLSLGSRCFVNRFKIDLFDKSFSPSL 272
DLS+G C +NRF D FDK++ ++
Sbjct: 60 DLSVGKTCLINRFCKDTFDKNYKATI 85
>BC066904-1|AAH66904.1| 259|Homo sapiens RAB34 protein protein.
Length = 259
Score = 32.7 bits (71), Expect = 3.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 349 DLSLGSRCFVNRFKIDLFDKSFSPSL 272
DLS+G C +NRF D FDK++ ++
Sbjct: 60 DLSVGKTCLINRFCKDTFDKNYKATI 85
>BC016841-1|AAH16841.1| 251|Homo sapiens RAB34 protein protein.
Length = 251
Score = 32.7 bits (71), Expect = 3.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 349 DLSLGSRCFVNRFKIDLFDKSFSPSL 272
DLS+G C +NRF D FDK++ ++
Sbjct: 60 DLSVGKTCLINRFCKDTFDKNYKATI 85
>AK074689-1|BAC11141.1| 259|Homo sapiens protein ( Homo sapiens
cDNA FLJ90208 fis, clone MAMMA1002080, highly similar to
Ras-related protein Rab-34. ).
Length = 259
Score = 32.7 bits (71), Expect = 3.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 349 DLSLGSRCFVNRFKIDLFDKSFSPSL 272
DLS+G C +NRF D FDK++ ++
Sbjct: 60 DLSVGKTCLINRFCKDTFDKNYKATI 85
>AK027312-1|BAB55034.1| 259|Homo sapiens protein ( Homo sapiens
cDNA FLJ14406 fis, clone HEMBA1004202, weakly similar to
RAS-RELATED PROTEIN RAB-13. ).
Length = 259
Score = 32.7 bits (71), Expect = 3.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 349 DLSLGSRCFVNRFKIDLFDKSFSPSL 272
DLS+G C +NRF D FDK++ ++
Sbjct: 60 DLSVGKTCLINRFCKDTFDKNYKATI 85
>AJ277106-1|CAC81760.1| 259|Homo sapiens GTP-binding protein rah
protein.
Length = 259
Score = 32.7 bits (71), Expect = 3.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 349 DLSLGSRCFVNRFKIDLFDKSFSPSL 272
DLS+G C +NRF D FDK++ ++
Sbjct: 60 DLSVGKTCLINRFCKDTFDKNYKATI 85
>AF327350-1|AAL05587.1| 211|Homo sapiens Ras-related GTP-binding
protein RAB39 protein.
Length = 211
Score = 32.7 bits (71), Expect = 3.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 349 DLSLGSRCFVNRFKIDLFDKSFSPSL 272
DLS+G C +NRF D FDK++ ++
Sbjct: 61 DLSVGKTCLINRFCKDTFDKNYKATI 86
>AF322067-1|AAK09397.1| 259|Homo sapiens RAB39 protein.
Length = 259
Score = 32.7 bits (71), Expect = 3.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 349 DLSLGSRCFVNRFKIDLFDKSFSPSL 272
DLS+G C +NRF D FDK++ ++
Sbjct: 60 DLSVGKTCLINRFCKDTFDKNYKATI 85
>Z95116-3|CAI17988.1| 423|Homo sapiens protein ( Human DNA sequence
from clone CTA-57G9 on chromosome 22q12.1. ).
Length = 423
Score = 31.9 bits (69), Expect = 6.4
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +3
Query: 1200 RGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPPH 1340
RG P G AG G R P G P P G P PPH
Sbjct: 202 RGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPH 248
>CR456407-1|CAG30293.1| 443|Homo sapiens bK984G1.1 protein.
Length = 443
Score = 31.9 bits (69), Expect = 6.4
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +3
Query: 1200 RGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPPH 1340
RG P G AG G R P G P P G P PPH
Sbjct: 222 RGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPH 268
>BC046358-1|AAH46358.1| 443|Homo sapiens EMI domain containing 1
protein.
Length = 443
Score = 31.9 bits (69), Expect = 6.4
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +3
Query: 1200 RGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPPH 1340
RG P G AG G R P G P P G P PPH
Sbjct: 222 RGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPH 268
>AY056842-1|AAL17907.1| 123|Homo sapiens anti-HIV-1 gp120
immunoglobulin heavy chain variable region protein.
Length = 123
Score = 31.9 bits (69), Expect = 6.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 243 RAFQVISRLSRDGEKDLSKRSILNRFTKHRDPSDKSIFRSRG 368
+ + +S +S DGE S+ RFT RD S ++F G
Sbjct: 43 KGLEYLSAISSDGETTYHANSVKGRFTSSRDNSKNTLFLQMG 84
>AL031186-3|CAI18002.1| 423|Homo sapiens protein ( Human DNA sequence
from clone CTA-984G1 on chromosome 22q12.1-12.2. ).
Length = 423
Score = 31.9 bits (69), Expect = 6.4
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +3
Query: 1200 RGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPPH 1340
RG P G AG G R P G P P G P PPH
Sbjct: 202 RGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPH 248
>AJ416090-1|CAC94777.1| 441|Homo sapiens putative emu1 protein
protein.
Length = 441
Score = 31.9 bits (69), Expect = 6.4
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +3
Query: 1200 RGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPPH 1340
RG P G AG G R P G P P G P PPH
Sbjct: 220 RGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPH 266
>AF304507-1|AAG25662.1| 104|Homo sapiens immunoglobulin heavy chain
VDJ region protein.
Length = 104
Score = 31.5 bits (68), Expect = 8.5
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +3
Query: 192 GIIADNTRMNRTADMVRRAFQVISRLSRDGEKDLSKRSILNRFTKHRDPSDKSIF 356
G+I + M+ + + ++ +++DG K S S+ RFT RD ++ S+F
Sbjct: 11 GLIFSDYWMSWVRQAPGKGLEWVANINQDGSKKYSVDSVKGRFTISRDNAENSLF 65
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,194,953
Number of Sequences: 237096
Number of extensions: 3746054
Number of successful extensions: 13134
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 10881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13031
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22800599744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -