Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_E07_e149_09.seq
         (1530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    30   5.0  
Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical pr...    30   5.0  
Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical pr...    29   8.7  
Z77132-3|CAB00860.1|  310|Caenorhabditis elegans Hypothetical pr...    29   8.7  
Z77132-2|CAB00858.1|  294|Caenorhabditis elegans Hypothetical pr...    29   8.7  

>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical protein
            F54B11.2 protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 20/60 (33%), Positives = 21/60 (35%)
 Frame = +3

Query: 1182 PKKKXTRGGPXXXPSGGXXXPAGXXXXXGTRXSPXXXGXPXPXGKTRPARPPHXXXXGGT 1361
            P  K    GP   P  G   PAG     G   SP     P P G + PA P       GT
Sbjct: 149  PPCKPCPAGPPGPP--GPDGPAGPAGPDGEAGSPAAPSPPGPPGPSGPAGPAGNDGAAGT 206


>Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical protein
            C53B4.5 protein.
          Length = 289

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 21/55 (38%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
 Frame = -1

Query: 1359 CLPS--GAXGGDGRALSFPAXXGXPXXKGNXGFPXXRXTRPGMXXPXKXXGXGPP 1201
            CLP   G  G  GRA   P   G P   GN G P      P    P K    GPP
Sbjct: 90   CLPGAQGPPGTPGRA-GRPGKPGAPGLNGNPGRPPKEPCEPITPPPCKPCPEGPP 143


>Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical protein
            C15A11.6 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
 Frame = +3

Query: 1170 NLXXPKKKXTRGGPXXXPSG--GXXXPAGXXXXXGTRXSPXXXGXPXPXGKT-RPARP 1334
            N   P K   RG     PSG  G   P G     G+  +P   G P P G   +P  P
Sbjct: 191  NPGSPGKSGQRGRGLPGPSGAPGSQGPPGAPGQPGSGNAPGPAGPPGPAGPNGQPGHP 248


>Z77132-3|CAB00860.1|  310|Caenorhabditis elegans Hypothetical protein
            F54D1.3 protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
 Frame = -1

Query: 1362 PCLPSGAXGGDGRALS--FPAXXGXPXXKGNXGFPXXRXTRPGMXXPXKXXGXGPP 1201
            P  PSG  G  G+  +  FP   G P   G  GFP  +   PG        G G P
Sbjct: 179  PAGPSGQPGTPGQRGNDGFPGAPGAPGDNGQPGFP-GQDGAPGQPGADGQRGAGTP 233


>Z77132-2|CAB00858.1|  294|Caenorhabditis elegans Hypothetical protein
            F54D1.2 protein.
          Length = 294

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
 Frame = -1

Query: 1362 PCLPSGAXGGDGRALS--FPAXXGXPXXKGNXGFPXXRXTRPGMXXPXKXXGXGPP 1201
            P  PSG  G  G+  +  FP   G P   G  GFP  +   PG        G G P
Sbjct: 163  PAGPSGQPGTPGQRGNDGFPGAPGAPGDNGQPGFP-GQDGAPGQPGADGQRGAGTP 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,083,365
Number of Sequences: 27780
Number of extensions: 557135
Number of successful extensions: 1316
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4400652752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)