Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_E07_e149_09.seq
         (1530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    26   0.99 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.99 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    24   3.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   5.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   5.3  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 25.8 bits (54), Expect = 0.99
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 387 TVYLIKYSRRKNILLSVESSLFFLNYCLQHL--CIY 488
           T+YL++   R  I  +V S LF+L YC   +  CIY
Sbjct: 27  TMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIY 62


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.8 bits (54), Expect = 0.99
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 387 TVYLIKYSRRKNILLSVESSLFFLNYCLQHL--CIY 488
           T+YL++   R  I  +V S LF+L YC   +  CIY
Sbjct: 475 TMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIY 510


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 490 K*IHKCCKQ*FKKNNDDSTDSNIFFRRLYFIKYTVNI*Q 374
           K IH      +  NN  + ++N + ++LY+  Y +NI Q
Sbjct: 88  KTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQ 126


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 451 NNDDSTDSNIFFRRLYFIKYTVNI*Q 374
           NN ++ + N + ++LY+  Y +NI Q
Sbjct: 331 NNYNNNNYNNYNKKLYYKNYIINIEQ 356


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 531 TNNLYSYRLVSITHYYLSLE 590
           TNNLY   L S + YY+++E
Sbjct: 263 TNNLYYSPLTSHSLYYVNME 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 362,047
Number of Sequences: 438
Number of extensions: 8281
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53592000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)