BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_E04_e125_10.seq (1522 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 259 8e-70 SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 259 8e-70 SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 259 8e-70 SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 139 1e-33 SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 1.7 >SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr 1|||Manual Length = 136 Score = 259 bits (634), Expect = 8e-70 Identities = 125/136 (91%), Positives = 132/136 (97%) Frame = +1 Query: 169 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 348 MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60 Query: 349 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 528 LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120 Query: 529 MPKDIQLARRIRGERA 576 PKD+QLARR+RGER+ Sbjct: 121 QPKDMQLARRLRGERS 136 >SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr 2|||Manual Length = 136 Score = 259 bits (634), Expect = 8e-70 Identities = 125/136 (91%), Positives = 132/136 (97%) Frame = +1 Query: 169 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 348 MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60 Query: 349 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 528 LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120 Query: 529 MPKDIQLARRIRGERA 576 PKD+QLARR+RGER+ Sbjct: 121 QPKDMQLARRLRGERS 136 >SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pombe|chr 2|||Manual Length = 136 Score = 259 bits (634), Expect = 8e-70 Identities = 125/136 (91%), Positives = 132/136 (97%) Frame = +1 Query: 169 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 348 MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60 Query: 349 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 528 LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRVTI Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120 Query: 529 MPKDIQLARRIRGERA 576 PKD+QLARR+RGER+ Sbjct: 121 QPKDMQLARRLRGERS 136 >SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||Manual Length = 120 Score = 139 bits (336), Expect = 1e-33 Identities = 75/118 (63%), Positives = 93/118 (78%), Gaps = 10/118 (8%) Frame = +1 Query: 244 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-- 405 A+KS + G + +P RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVA 61 Query: 406 --KTD--LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 567 TD LR+QS A+ LQEA+EA+LV LFEDTNLCAIHAKRVTIM +D+QLARRIRG Sbjct: 62 NFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119 >SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1388 Score = 29.1 bits (62), Expect = 1.7 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%) Frame = +1 Query: 274 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAA 435 + + HR + +L E + +++ S LLI P Q +RE+A DF +F + Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEIN 566 Query: 436 IGALQEASEAYLVGLFE 486 + A E EAY+ L E Sbjct: 567 LEAPDEEQEAYIRSLQE 583 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,250,391 Number of Sequences: 5004 Number of extensions: 75630 Number of successful extensions: 165 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 159 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 164 length of database: 2,362,478 effective HSP length: 76 effective length of database: 1,982,174 effective search space used: 852334820 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -