Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_E04_e125_10.seq
(1522 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65360.1 68418.m08221 histone H3 identical to histone H3 from... 266 2e-71
At5g10400.1 68418.m01206 histone H3 identical to several histone... 266 2e-71
At5g10390.1 68418.m01205 histone H3 identical to histone H3 from... 266 2e-71
At3g27360.1 68416.m03421 histone H3 identical to histone H3 from... 266 2e-71
At1g09200.1 68414.m01027 histone H3 identical to histone H3 from... 266 2e-71
At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2, M... 265 5e-71
At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,... 265 5e-71
At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,... 265 5e-71
At5g65350.1 68418.m08220 histone H3 nearly identical to histone ... 256 4e-68
At1g75600.1 68414.m08784 histone H3.2, putative strong similarit... 256 4e-68
At1g13370.1 68414.m01554 histone H3, putative strong similarity ... 251 8e-67
At1g19890.1 68414.m02494 histone H3, putative similar to histone... 239 5e-63
At5g12910.1 68418.m01481 histone H3, putative similar to histone... 193 2e-49
At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12) si... 113 4e-25
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 32 1.1
At5g66410.1 68418.m08376 expressed protein 30 4.6
>At5g65360.1 68418.m08221 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 266 bits (653), Expect = 2e-71
Identities = 129/136 (94%), Positives = 135/136 (99%)
Frame = +1
Query: 169 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 348
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 349 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 528
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 529 MPKDIQLARRIRGERA 576
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At5g10400.1 68418.m01206 histone H3 identical to several histone H3
proteins, including Zea mays SP|P05203, Medicago sativa
GI:166384, Encephalartos altensteinii SP|P08903, Pisum
sativum SP|P02300; contains Pfam profile PF00125 Core
histone H2A/H2B/H3/H4
Length = 136
Score = 266 bits (653), Expect = 2e-71
Identities = 129/136 (94%), Positives = 135/136 (99%)
Frame = +1
Query: 169 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 348
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 349 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 528
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 529 MPKDIQLARRIRGERA 576
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At5g10390.1 68418.m01205 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 266 bits (653), Expect = 2e-71
Identities = 129/136 (94%), Positives = 135/136 (99%)
Frame = +1
Query: 169 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 348
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 349 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 528
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 529 MPKDIQLARRIRGERA 576
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At3g27360.1 68416.m03421 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 266 bits (653), Expect = 2e-71
Identities = 129/136 (94%), Positives = 135/136 (99%)
Frame = +1
Query: 169 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 348
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 349 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 528
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 529 MPKDIQLARRIRGERA 576
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At1g09200.1 68414.m01027 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 266 bits (653), Expect = 2e-71
Identities = 129/136 (94%), Positives = 135/136 (99%)
Frame = +1
Query: 169 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 348
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 349 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 528
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 529 MPKDIQLARRIRGERA 576
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2,
MINOR, Medicago sativa, SWISSPROT:P11105, histone H3
variant H3.3 Lycopersicon esculentum GI:1435157;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 265 bits (650), Expect = 5e-71
Identities = 130/136 (95%), Positives = 134/136 (98%)
Frame = +1
Query: 169 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 348
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 349 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 528
LLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 529 MPKDIQLARRIRGERA 576
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,
minor Lolium temulentum SP|P11105, nearly identical to
histone H3.2 Mus pahari GI:515005; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 265 bits (650), Expect = 5e-71
Identities = 130/136 (95%), Positives = 134/136 (98%)
Frame = +1
Query: 169 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 348
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 349 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 528
LLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 529 MPKDIQLARRIRGERA 576
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,
minor Lolium temulentum SP|P11105, nearly identical to
histone H3.2 Mus pahari GI:515005; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 265 bits (650), Expect = 5e-71
Identities = 130/136 (95%), Positives = 134/136 (98%)
Frame = +1
Query: 169 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 348
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 349 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 528
LLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 529 MPKDIQLARRIRGERA 576
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>At5g65350.1 68418.m08220 histone H3 nearly identical to histone H3
from Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 139
Score = 256 bits (626), Expect = 4e-68
Identities = 123/136 (90%), Positives = 133/136 (97%)
Frame = +1
Query: 169 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 348
MARTKQTAR STGGKAPRKQLA KAAR+SAP+TGGVKKPHR+RPGTVALR+IR+YQKSTE
Sbjct: 1 MARTKQTARISTGGKAPRKQLAPKAARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTE 60
Query: 349 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 528
+LIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 ILIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 529 MPKDIQLARRIRGERA 576
MPK+IQLARRIRGERA
Sbjct: 121 MPKEIQLARRIRGERA 136
>At1g75600.1 68414.m08784 histone H3.2, putative strong similarity
to histone H3.2 SP|P11105 GI:417103 from Lolium
temulentum, histone H3.2 from Mus pahari GI:515005;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 256 bits (626), Expect = 4e-68
Identities = 125/136 (91%), Positives = 131/136 (96%)
Frame = +1
Query: 169 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 348
MARTKQTARKS GGKAPR LATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 349 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 528
LLIRKLPFQRLVREIAQD+KTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 529 MPKDIQLARRIRGERA 576
MPKD+QLARRIRGERA
Sbjct: 121 MPKDVQLARRIRGERA 136
>At1g13370.1 68414.m01554 histone H3, putative strong similarity to
Histone H3.2, minor Medicago sativa SP|P11105, histone
H3 Rubus idaeus GI:10732809; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 251 bits (615), Expect = 8e-67
Identities = 123/136 (90%), Positives = 130/136 (95%)
Frame = +1
Query: 169 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 348
MARTKQ+ARKS GGKAP KQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTE 60
Query: 349 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 528
LL RKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 529 MPKDIQLARRIRGERA 576
MPKD+QLARRIR ERA
Sbjct: 121 MPKDVQLARRIRAERA 136
>At1g19890.1 68414.m02494 histone H3, putative similar to histone H3
from Chlamydomonas reinhardtii GI:571470, Volvox carteri
SP|P08437, histone H3.2 minor from Lolium temulentum
SP|P11105; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 137
Score = 239 bits (584), Expect = 5e-63
Identities = 119/137 (86%), Positives = 127/137 (92%), Gaps = 1/137 (0%)
Frame = +1
Query: 169 MARTKQTARKSTGGKAPRKQLATKAARKSA-PSTGGVKKPHRYRPGTVALREIRRYQKST 345
MARTKQTARKSTGGK PRK+LATKAARK+ P GGVK+ HR+RPGTVALREIR+YQKST
Sbjct: 1 MARTKQTARKSTGGKGPRKELATKAARKTRRPYRGGVKRAHRFRPGTVALREIRKYQKST 60
Query: 346 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVT 525
+LLIRKLPFQRLVREIAQDFK DLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVT
Sbjct: 61 DLLIRKLPFQRLVREIAQDFKVDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 120
Query: 526 IMPKDIQLARRIRGERA 576
IM KDIQLARRIRGERA
Sbjct: 121 IMSKDIQLARRIRGERA 137
>At5g12910.1 68418.m01481 histone H3, putative similar to histone H3
from Mus musculus GI:51301, Gallus gallus GI:211859,
Medicago sativa GI:166384, Pisum sativum SP|P02300;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 193 bits (471), Expect = 2e-49
Identities = 93/135 (68%), Positives = 115/135 (85%)
Frame = +1
Query: 169 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 348
MAR+ QTARK+TGGKAP A + + S P +KKP+RY+PGTVALREIR+YQK+T+
Sbjct: 1 MARSNQTARKATGGKAPH--FAMRVWQHSTPP---LKKPYRYKPGTVALREIRKYQKTTD 55
Query: 349 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 528
L+IRKLPFQRLV+EIAQ K DLRFQ+ A+ ALQEA+EA++VG+FEDTNLCA+HAKR TI
Sbjct: 56 LVIRKLPFQRLVKEIAQSLKADLRFQTGAVSALQEAAEAFMVGMFEDTNLCAMHAKRSTI 115
Query: 529 MPKDIQLARRIRGER 573
MPKDIQLA+R+RG+R
Sbjct: 116 MPKDIQLAKRLRGDR 130
>At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12)
similar to histone H3 GB:X17141 GI:10795 from
Tetrahymena pyriformis, GI:161790 from Tetrahymena
thermophila; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 178
Score = 113 bits (271), Expect = 4e-25
Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 2/133 (1%)
Frame = +1
Query: 178 TKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLI 357
T+QT ++ R+ K +R++ P G KK +RYRPGTVAL+EIR +QK T LLI
Sbjct: 45 TQQTNPTTSPATGTRR--GAKRSRQAMPR-GSQKKSYRYRPGTVALKEIRHFQKQTNLLI 101
Query: 358 RKLPFQRLVREIAQDFKTDL--RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 531
F R VR I R+ + A+ ALQEA+E YLVGLF D+ LCAIHA+RVT+M
Sbjct: 102 PAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRVTLM 161
Query: 532 PKDIQLARRIRGE 570
KD +LARR+ G+
Sbjct: 162 RKDFELARRLGGK 174
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 31.9 bits (69), Expect = 1.1
Identities = 21/87 (24%), Positives = 38/87 (43%)
Frame = -2
Query: 417 KIGFKVLSNFSNESLERQLADQQLRRFLIATNFSKRYSTRAITMGFLNSTSTGCRFSRRF 238
++G + + ++ +L L D+Q++ TNF+ G S +GCR + F
Sbjct: 599 RLGHGDVDDRNSPTLVESLKDKQVKSIACGTNFTAAVCIHRWASGMDQSMCSGCR--QPF 656
Query: 237 SSQLFARSFTSCRFTGCLLCTCHYSLQ 157
S + + +C C CT SL+
Sbjct: 657 SFKRKRHNCYNCGLVFCHSCTSKKSLK 683
>At5g66410.1 68418.m08376 expressed protein
Length = 230
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +1
Query: 355 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 534
+ L F ++ A+D+K ++ A G+ E L L +D L +HA R+ +
Sbjct: 10 LSNLAFGNVLAAAARDYKKEVLANEKAQGSRPVNEEVDLDELMDDPELEKLHADRIAALR 69
Query: 535 KDIQ 546
++++
Sbjct: 70 REVE 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,678,960
Number of Sequences: 28952
Number of extensions: 409463
Number of successful extensions: 849
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4067485824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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