Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_E03_e117_09.seq
         (1521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...    60   3e-09
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...    60   5e-09
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    58   1e-08

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score = 60.5 bits (140), Expect = 3e-09
 Identities = 30/79 (37%), Positives = 38/79 (48%)
 Frame = +2

Query: 98  KLSPXKIXNPLFEKRXXNFAIGQDIQPTRDLSCFVRWXKYIRIXRQKAXSQXXXKVPPPI 277
           K    K+ NPLFEKR   F IG  + P +DL  FV+W K +RI RQ+   +   KVPP +
Sbjct: 14  KKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPAL 73

Query: 278 XXXXXXXXXXXXXGLFXXL 334
                         LF  L
Sbjct: 74  NQFTRTLDKNLATNLFKML 92


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score = 60.1 bits (139), Expect = 5e-09
 Identities = 29/74 (39%), Positives = 37/74 (50%)
 Frame = +2

Query: 113 KIXNPLFEKRXXNFAIGQDIQPTRDLSCFVRWXKYIRIXRQKAXSQXXXKVPPPIXXXXX 292
           K+ NPLFEKR   F IG  + P +DL  FV+W K +RI RQ+   +   KVPP +     
Sbjct: 3   KVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTR 62

Query: 293 XXXXXXXXGLFXXL 334
                    LF  L
Sbjct: 63  TLDKNLATNLFKML 76


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 28/61 (45%), Positives = 35/61 (57%)
 Frame = +2

Query: 95  RKLSPXKIXNPLFEKRXXNFAIGQDIQPTRDLSCFVRWXKYIRIXRQKAXSQXXXKVPPP 274
           RK +     NPLFEKR   F IG  + P +DL  FVRW K +RI RQ+   +   KVPP 
Sbjct: 14  RKKAAAAAVNPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPA 73

Query: 275 I 277
           +
Sbjct: 74  L 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,572,069
Number of Sequences: 37544
Number of extensions: 125444
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4884487468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)