Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_E03_e117_09.seq
         (1521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    76   6e-14
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    76   6e-14
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    75   2e-13
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    75   2e-13

>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 76.2 bits (179), Expect = 6e-14
 Identities = 39/86 (45%), Positives = 52/86 (60%)
 Frame = +2

Query: 20  PFKMVQXKPXKXIWEXSSGRVHLW*RKLSPXKIXNPLFEKRXXNFAIGQDIQPTRDLSCF 199
           P+KM   K  K   + ++   H+  +     ++ NPLFEKR  NF IGQDIQP +D++ F
Sbjct: 101 PYKMPSKKVIKK--KVAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRF 158

Query: 200 VRWXKYIRIXRQKAXSQXXXKVPPPI 277
           V+W KYIR+ RQ A  Q   KVPP I
Sbjct: 159 VKWPKYIRLQRQSAILQKRLKVPPTI 184


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 76.2 bits (179), Expect = 6e-14
 Identities = 39/86 (45%), Positives = 52/86 (60%)
 Frame = +2

Query: 20  PFKMVQXKPXKXIWEXSSGRVHLW*RKLSPXKIXNPLFEKRXXNFAIGQDIQPTRDLSCF 199
           P+KM   K  K   + ++   H+  +     ++ NPLFEKR  NF IGQDIQP +D++ F
Sbjct: 101 PYKMPSKKVIKK--KVAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRF 158

Query: 200 VRWXKYIRIXRQKAXSQXXXKVPPPI 277
           V+W KYIR+ RQ A  Q   KVPP I
Sbjct: 159 VKWPKYIRLQRQSAILQKRLKVPPTI 184


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 74.5 bits (175), Expect = 2e-13
 Identities = 33/55 (60%), Positives = 40/55 (72%)
 Frame = +2

Query: 113 KIXNPLFEKRXXNFAIGQDIQPTRDLSCFVRWXKYIRIXRQKAXSQXXXKVPPPI 277
           ++ NPLFEKR  NF IGQDIQP +D++ FV+W KYIR+ RQ A  Q   KVPP I
Sbjct: 27  EVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTI 81


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 74.5 bits (175), Expect = 2e-13
 Identities = 33/55 (60%), Positives = 40/55 (72%)
 Frame = +2

Query: 113 KIXNPLFEKRXXNFAIGQDIQPTRDLSCFVRWXKYIRIXRQKAXSQXXXKVPPPI 277
           ++ NPLFEKR  NF IGQDIQP +D++ FV+W KYIR+ RQ A  Q   KVPP I
Sbjct: 27  EVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTI 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,945,376
Number of Sequences: 27780
Number of extensions: 91418
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4369516058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)