Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_E03_e117_09.seq
         (1521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    63   4e-10
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            61   2e-09

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 63.3 bits (147), Expect = 4e-10
 Identities = 30/79 (37%), Positives = 40/79 (50%)
 Frame = +2

Query: 98  KLSPXKIXNPLFEKRXXNFAIGQDIQPTRDLSCFVRWXKYIRIXRQKAXSQXXXKVPPPI 277
           K  P K+ NPLFE+R   F IG  + P +DLS +++W K IR+ RQK   +   KVPP +
Sbjct: 12  KKKPEKVTNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPAL 71

Query: 278 XXXXXXXXXXXXXGLFXXL 334
                         LF  L
Sbjct: 72  NQFTKTLDKNLATSLFKIL 90


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 61.3 bits (142), Expect = 2e-09
 Identities = 29/80 (36%), Positives = 41/80 (51%)
 Frame = +2

Query: 95  RKLSPXKIXNPLFEKRXXNFAIGQDIQPTRDLSCFVRWXKYIRIXRQKAXSQXXXKVPPP 274
           +K +  K+ NPLFE+R   F IG  + P +DLS +++W K IR+ RQK   +   KVPP 
Sbjct: 12  KKKTAEKVSNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPA 71

Query: 275 IXXXXXXXXXXXXXGLFXXL 334
           +              LF  L
Sbjct: 72  LNQFTKTLDKNLATSLFKVL 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,586,118
Number of Sequences: 28952
Number of extensions: 88762
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4067485824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)