Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_E01_e101_09.seq
         (1348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   1.5  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    28   2.6  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    27   7.8  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    27   7.8  

>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 21/58 (36%), Positives = 35/58 (60%)
 Frame = +2

Query: 89  APSLKDLPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 262
           AP  K L K+ N+L+S L+    SCL+D  T+ K ++       +EKTQ+ +FD +++
Sbjct: 13  APGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKR 63


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 24/71 (33%), Positives = 35/71 (49%)
 Frame = +2

Query: 176 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQN 355
           D  EK V  S +    E+ QK++ D  E+ D  S+  T T  K+      +   EK HQ 
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187

Query: 356 LLEGVEHFDKT 388
            +EGV++  KT
Sbjct: 188 AVEGVQNSKKT 198


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -1

Query: 691 DNANGPIICRG--LTSSLKYGD 632
           D  NGP++C G   TS +K+ D
Sbjct: 491 DGPNGPVVCHGHTFTSMIKFND 512


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -2

Query: 858 INXPYIKXPLYNPVKSYVKKDFIFYRLNDTGTRPF*NF*MVEVIMLYLKKKTRLK 694
           I  P  K  +YN + S VK+D    RL     +      + E+  L +K+K +LK
Sbjct: 560 IESPVSKSDVYNAITSAVKRDVFINRL-----QRLRRMNLYEITFLSMKQKMQLK 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,932,314
Number of Sequences: 5004
Number of extensions: 74848
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 741217394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)