BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_E01_e101_09.seq (1348 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 80 4e-15 Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical pr... 29 7.5 Z47075-6|CAA87379.1| 538|Caenorhabditis elegans Hypothetical pr... 29 9.9 AF500111-1|AAM27196.1| 538|Caenorhabditis elegans poly ADP-ribo... 29 9.9 >AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin (four thymosin repeatprotein) protein 1 protein. Length = 151 Score = 79.8 bits (188), Expect = 4e-15 Identities = 53/144 (36%), Positives = 70/144 (48%), Gaps = 1/144 (0%) Frame = +2 Query: 95 SLKDLPKVANDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDA 271 ++ +LPK+ +L + EG L+ V+T EK VLP+ EDVA EK IE FD+ Sbjct: 3 AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDS 59 Query: 272 TSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMKHTTTEEKNSLXXXXXXXX 451 T L T +EK LP D + EK H L + + +F +K T T EKN L Sbjct: 60 TKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVL----PSPT 115 Query: 452 XXXXNKFLNGIESFDPTKLKHTET 523 K L SFD + L H ET Sbjct: 116 DVAREKTLQMAASFDKSALHHVET 139 Score = 71.7 bits (168), Expect = 1e-12 Identities = 39/110 (35%), Positives = 56/110 (50%) Frame = +2 Query: 266 DATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMKHTTTEEKNSLXXXXXX 445 + LK ET EKN LP K+ VA EK H + +EHFD T++ T +EK L Sbjct: 20 EGLELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDI 79 Query: 446 XXXXXXNKFLNGIESFDPTKLKHTETCEKNPLPTKDVIEQEKSA*ITSSY 595 + + I +F LK TET EKN LP+ + +EK+ + +S+ Sbjct: 80 KQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQMAASF 129 Score = 39.1 bits (87), Expect = 0.007 Identities = 28/82 (34%), Positives = 37/82 (45%) Frame = +2 Query: 326 VVAAEKAHQNLLEGVEHFDKTQMKHTTTEEKNSLXXXXXXXXXXXXNKFLNGIESFDPTK 505 V K +Q L V + ++K T EKN L + ++ IE FD TK Sbjct: 4 VTELPKMNQELAGAVR--EGLELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTK 61 Query: 506 LKHTETCEKNPLPTKDVIEQEK 571 L T EK LP+ D I+QEK Sbjct: 62 LHSTPVKEKIVLPSADDIKQEK 83 >Z81082-3|CAB03095.2| 603|Caenorhabditis elegans Hypothetical protein F42G4.3a protein. Length = 603 Score = 29.1 bits (62), Expect = 7.5 Identities = 14/55 (25%), Positives = 25/55 (45%) Frame = +2 Query: 371 EHFDKTQMKHTTTEEKNSLXXXXXXXXXXXXNKFLNGIESFDPTKLKHTETCEKN 535 ++F+ T TTT NSL L E +DP+K++ +++ +N Sbjct: 209 DYFNNTATTATTTTSSNSLNENNNSNKYGNKETVLQWSEPYDPSKIRRSQSPIRN 263 >Z47075-6|CAA87379.1| 538|Caenorhabditis elegans Hypothetical protein E02H1.4 protein. Length = 538 Score = 28.7 bits (61), Expect = 9.9 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = -1 Query: 799 RFYFLQTK*YGDASILKLLNGR-GYNAVFKKKDTFKMDNA 683 +FY ++ G I+KL+NGR GY V + KD +D A Sbjct: 27 KFYDMELLDEGGDFIVKLINGRIGYRGVTQLKDFDDLDRA 66 >AF500111-1|AAM27196.1| 538|Caenorhabditis elegans poly ADP-ribose metabolism enzyme-2 protein. Length = 538 Score = 28.7 bits (61), Expect = 9.9 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = -1 Query: 799 RFYFLQTK*YGDASILKLLNGR-GYNAVFKKKDTFKMDNA 683 +FY ++ G I+KL+NGR GY V + KD +D A Sbjct: 27 KFYDMELLDEGGDFIVKLINGRIGYRGVTQLKDFDDLDRA 66 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,724,059 Number of Sequences: 27780 Number of extensions: 416451 Number of successful extensions: 977 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 934 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 973 length of database: 12,740,198 effective HSP length: 84 effective length of database: 10,406,678 effective search space used: 3788030792 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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