Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_D10_e172_08.seq
(1510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 248 2e-66
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 245 1e-65
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 208 2e-54
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 31 0.41
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 30 0.72
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 2.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 5.1
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 5.1
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 27 6.7
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 27 6.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 8.9
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 248 bits (606), Expect = 2e-66
Identities = 106/184 (57%), Positives = 146/184 (79%), Gaps = 1/184 (0%)
Frame = +3
Query: 132 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRL 311
R++I L R+AR GNYYVP E KL FVIRIRG+N + PK RK++QL RL QINNGVFV+
Sbjct: 68 REQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKF 127
Query: 312 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 491
NKAT ML++ EPY+ +G PNLK+VREL+YKRGF K+N +R+ ++ N++IE L K +I+
Sbjct: 128 NKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSIL 187
Query: 492 CVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNREDKVNELL 668
+EDLIHEI+TVG FK A+NF+WPF+L++P GGWR +K H+++GGD G R++ +N L+
Sbjct: 188 SIEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLV 247
Query: 669 RRMV 680
R+M+
Sbjct: 248 RKML 251
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 245 bits (600), Expect = 1e-65
Identities = 105/184 (57%), Positives = 146/184 (79%), Gaps = 1/184 (0%)
Frame = +3
Query: 132 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRL 311
R++I LAR+AR GNY+VP E KL FV+RIRG+N + PK RK++QL RL QINNG+FV+
Sbjct: 67 REQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKF 126
Query: 312 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 491
NKA ML++ EPY+ +G PN K+VREL+YKRGF K+N +R+P++ N++IE L K +I+
Sbjct: 127 NKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSIL 186
Query: 492 CVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNREDKVNELL 668
VEDLIHEI+TVG FK A+NFLWPFKL++P GGWR +K H+++GGD G R++ +N L+
Sbjct: 187 SVEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLV 246
Query: 669 RRMV 680
++M+
Sbjct: 247 QKML 250
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 208 bits (508), Expect = 2e-54
Identities = 98/190 (51%), Positives = 131/190 (68%), Gaps = 1/190 (0%)
Frame = +3
Query: 114 NTASRXRDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINN 293
N R R+ IRL R A+N+G+ +VP E KL FVIRI GV + PK+RKVL+L RL +INN
Sbjct: 60 NYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINN 119
Query: 294 GVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRL 473
VFVR NKA MLRI EPY+ +G PNL SVREL+YKRGF K+NG+R+ ++ N+LIE+ L
Sbjct: 120 AVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEAL 179
Query: 474 SKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG-WRKKTIHYVDGGDFGNRED 650
K ++I +ED+IHEI+ VG FK + FLWPF L KK H+ +G G +
Sbjct: 180 GKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAGYCGE 239
Query: 651 KVNELLRRMV 680
++NEL+++ V
Sbjct: 240 EINELIKKQV 249
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 31.1 bits (67), Expect = 0.41
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 454 HSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTS 558
HSS + L+N+ SSAL+++ + S +SSS+Q +S
Sbjct: 90 HSSSQKLSNKVSSALKLTIPKRWRSSKSSSSQCSS 124
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 30.3 bits (65), Expect = 0.72
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 372 NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLS--KQNIICVEDLIHEIFTVGEKFKY 545
N KSV + G L G ++ I+ + ++ R+ KQ ++ +E L H++ + K+
Sbjct: 143 NAKSVERIAEVSGNYALAGAQI-ISPSDCMDGRVKAIKQKLVELE-LSHKVCVISYSAKF 200
Query: 546 ASNFLWPFK 572
AS F PF+
Sbjct: 201 ASGFFGPFR 209
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 2.2
Identities = 30/105 (28%), Positives = 50/105 (47%)
Frame = +1
Query: 259 YCSCSGCVRSTTACSFVSTRPQ*TCFVSLSPILHGATPT*RVSESWCTNAVSPN*TGSVS 438
Y + +G +++T + S VS+ + S SP T T S S +++ S + + S S
Sbjct: 116 YLTGNGVLQTTVSSSSVSSTTSSSS--SSSPSSSSTTTTTSPSSSSSSSSSSSS-SSSSS 172
Query: 439 RSPPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCGHSN 573
S + SS ++ +SS+ SS S SSS +TS S+
Sbjct: 173 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSS 217
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 5.1
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Frame = +1
Query: 280 VRSTTACSFVSTRPQ*TCFVSLSPILHGATPT*RVSESWCTNAVSPN*TG-------SVS 438
V STTA S ST P T S + +TP V+ + T+A S T SVS
Sbjct: 460 VNSTTATSASST-PL-TSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVS 517
Query: 439 RSPPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCGHSN*TT 582
+ P++++ L + S+ +SS + +SST +TS + T+
Sbjct: 518 STAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLTSVNSTTATS 565
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 159 ARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRL 278
+ N+G YY G +AFV I GV + SP++ LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 369 PNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 491
P LK+ REL+ K+ + V SN ++EK L +II
Sbjct: 423 PKLKAERELLSKQESMEKQSMHVDEESNQILEKFLDVYDII 463
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 610 IVFLRQPPVGLFSLNGHRKLLAYLNFSPTVNISWMRSSTQMMF--CLLSLFSMSELEVI 440
IV++ Q + LFSL G L ++ + T+ SW ++ CLLS+ + ++ I
Sbjct: 68 IVYILQ--IFLFSLFGSCMLFRFIKYPSTIKDSWNHHLEKLFIATCLLSISTFIDMLAI 124
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 8.9
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 280 VRSTTACSFVSTRPQ*TC--FVSLSPILHGATPT*RVSESWCTNAVSPN*TGSVSRSPPT 453
V ST++ +F S P T ++S S ++ ++ S S T++ + S S P T
Sbjct: 189 VSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSS-----SLSTSSIPST 243
Query: 454 HSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCGHSN 573
SS ++ TSS+L SS S SSS+ + S S+
Sbjct: 244 SSS----SSSTSSSLSSSSSSSTASSSSSSSSIISSSSSS 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,782,230
Number of Sequences: 5004
Number of extensions: 86878
Number of successful extensions: 228
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 844406124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -