Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_D10_e172_08.seq
(1510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 263 2e-70
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 254 2e-67
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 142 5e-34
03_05_0172 - 21488504-21488752,21488862-21489611,21489691-214897... 32 1.0
02_04_0580 + 24065830-24065967,24066163-24067425 30 5.5
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468 29 9.6
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 263 bits (645), Expect = 2e-70
Identities = 116/185 (62%), Positives = 151/185 (81%)
Frame = +3
Query: 123 SRXRDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVF 302
++ ++ ++L R+AR +G +YV EAKL FV+RIRG+N + PK RK+LQL RLRQI NGVF
Sbjct: 60 AQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVF 119
Query: 303 VRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQ 482
+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+ +N +IE+ L K
Sbjct: 120 LKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKH 179
Query: 483 NIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKVNE 662
+IIC+EDL+HEI TVG FK A+NFLWPFKL P GG +KK HYV+GGD GNRED +NE
Sbjct: 180 DIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINE 239
Query: 663 LLRRM 677
L+RRM
Sbjct: 240 LIRRM 244
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 254 bits (621), Expect = 2e-67
Identities = 115/191 (60%), Positives = 151/191 (79%), Gaps = 6/191 (3%)
Frame = +3
Query: 123 SRXRDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVF 302
++ ++ ++L R+AR +G +YV E KL FV+RIRG+N + PK RK+LQL RLRQI NGVF
Sbjct: 59 AQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVF 118
Query: 303 VRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKR---- 470
+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+T+N +IE+
Sbjct: 119 LKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLY 178
Query: 471 --LSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNR 644
L K +IIC+EDL+HEI TVG FK A+NFLWPFKL P GG +KK HYV+GGD GNR
Sbjct: 179 QGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNR 238
Query: 645 EDKVNELLRRM 677
E+ +NEL+RRM
Sbjct: 239 ENYINELIRRM 249
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 142 bits (345), Expect = 5e-34
Identities = 67/146 (45%), Positives = 97/146 (66%)
Frame = +3
Query: 195 AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPN 374
+KL F IRI G + P +R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PN
Sbjct: 86 SKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPN 145
Query: 375 LKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASN 554
LK+V++L+YK+G L+ + P+TSN LIEK L + IIC+EDL+HEI +VG F+ ASN
Sbjct: 146 LKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREASN 205
Query: 555 FLWPFKLNNPTGGWRKKTIHYVDGGD 632
FL PFKL P + K + DG +
Sbjct: 206 FLMPFKLKCPERRLQMKKKPFKDGAE 231
>03_05_0172 -
21488504-21488752,21488862-21489611,21489691-21489789,
21489862-21490776,21490847-21490976,21491438-21491583,
21491801-21491896,21492521-21492613,21492702-21492755,
21492897-21492956,21493046-21493171,21493283-21493366,
21493444-21493587,21493667-21493963
Length = 1080
Score = 32.3 bits (70), Expect = 1.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 835 NRLAAHPPFSPAXRNSEXGPPRSPXSQQ 918
N AA PP SPA +NS P SP S +
Sbjct: 42 NLAAASPPMSPAAKNSSAAPGASPRSSK 69
>02_04_0580 + 24065830-24065967,24066163-24067425
Length = 466
Score = 29.9 bits (64), Expect = 5.5
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Frame = +3
Query: 321 TVNMLRIAE--PYIAWGYPNLKSVRELVYKRG--FAKLNGKRVPITSNSLIEKRLSKQNI 488
T+ +L +A+ P A G+ + E+ + FA NG+ + S + I+ L
Sbjct: 71 TMAVLSVADSPPVSAIGFEGYEKRLEITFSEAPVFADPNGRGLRALSRAQIDSVLDLARC 130
Query: 489 ICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRK 602
V +L +E+F +S F++P+K+ T G K
Sbjct: 131 TIVSELSNEVFD-SYVLSESSLFVYPYKIVIKTCGTTK 167
>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
Length = 1078
Score = 29.1 bits (62), Expect = 9.6
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Frame = +3
Query: 189 GEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGY 368
G+ K I +RG + ++ + +L +LR ++ ++N R+ + WG+
Sbjct: 621 GKMKFLEHIGLRGCHSLAELPSSITELPKLRHLSIDE-TKINAIPRGFKRLENLEMLWGF 679
Query: 369 P-------------NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVE 500
P +L+ + L R + + VP +S + + K +K+N+IC+E
Sbjct: 680 PVHIIIENTGEYRCSLEELGPLSKLRKLKLIGLENVPYSSMATLAKLKTKENLICLE 736
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,706,357
Number of Sequences: 37544
Number of extensions: 635563
Number of successful extensions: 1375
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4838079036
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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