Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D10_e172_08.seq
         (1510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   283   3e-76
Z78415-3|CAB01674.1|  530|Caenorhabditis elegans Hypothetical pr...    30   4.9  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  283 bits (693), Expect = 3e-76
 Identities = 122/183 (66%), Positives = 156/183 (85%)
 Frame = +3

Query: 132 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRL 311
           ++ +RL R+A  +G++YVP E K+AFV+RIRG+NQ+ PK RK LQ+ RLRQINNGVFV+L
Sbjct: 62  KEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKL 121

Query: 312 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 491
           NKAT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK++G RVPIT N+++E+ L K NII
Sbjct: 122 NKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNII 181

Query: 492 CVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKVNELLR 671
           C+EDL HEI TVG  FK A+NFLWPFKLNNPTGGW KKT H+V+GGDFGNRED++N LLR
Sbjct: 182 CLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLR 241

Query: 672 RMV 680
           +MV
Sbjct: 242 KMV 244


>Z78415-3|CAB01674.1|  530|Caenorhabditis elegans Hypothetical
           protein C17G1.3a protein.
          Length = 530

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 22/68 (32%), Positives = 36/68 (52%)
 Frame = +3

Query: 474 SKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDK 653
           +KQ II  ++ + EIF+  EKF   SN +W  +++NP   W    I     G    +  K
Sbjct: 71  AKQIIIDADEEVVEIFSQTEKF--LSN-MWTMEMSNPLMMWMNPRILTQLFGKQCTKVMK 127

Query: 654 VNELLRRM 677
           ++ELL ++
Sbjct: 128 LSELLDQL 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,288,867
Number of Sequences: 27780
Number of extensions: 522794
Number of successful extensions: 1179
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4349991404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)