Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_D10_e172_08.seq
(1510 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 259 3e-69
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 259 3e-69
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 258 5e-69
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 258 5e-69
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 258 5e-69
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 256 3e-68
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 152 5e-37
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 30 3.5
At2g35540.1 68415.m04353 DNAJ heat shock N-terminal domain-conta... 30 3.5
At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 6.0
At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 6.0
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 29 6.0
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 8.0
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 259 bits (635), Expect = 3e-69
Identities = 116/190 (61%), Positives = 150/190 (78%)
Frame = +3
Query: 108 SKNTASRXRDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQI 287
+K A + + IRL R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI
Sbjct: 57 AKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 116
Query: 288 NNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEK 467
NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+ KLN +R+ +T NS++++
Sbjct: 117 FNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQ 176
Query: 468 RLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRE 647
L K IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE
Sbjct: 177 ALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRE 236
Query: 648 DKVNELLRRM 677
+ +NEL+RRM
Sbjct: 237 NFINELVRRM 246
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 259 bits (635), Expect = 3e-69
Identities = 116/190 (61%), Positives = 150/190 (78%)
Frame = +3
Query: 108 SKNTASRXRDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQI 287
+K A + + IRL R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI
Sbjct: 52 AKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 111
Query: 288 NNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEK 467
NGVF+++NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+ KLN +R+ +T NS++++
Sbjct: 112 FNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQ 171
Query: 468 RLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRE 647
L K IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE
Sbjct: 172 ALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRE 231
Query: 648 DKVNELLRRM 677
+ +NEL+RRM
Sbjct: 232 NFINELVRRM 241
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 258 bits (633), Expect = 5e-69
Identities = 116/190 (61%), Positives = 149/190 (78%)
Frame = +3
Query: 108 SKNTASRXRDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQI 287
SK + R+ I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI
Sbjct: 54 SKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 113
Query: 288 NNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEK 467
NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KLN +R +T NS++++
Sbjct: 114 FNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQ 173
Query: 468 RLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRE 647
L K IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE
Sbjct: 174 GLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRE 233
Query: 648 DKVNELLRRM 677
+ +NEL+RRM
Sbjct: 234 NFINELVRRM 243
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 258 bits (633), Expect = 5e-69
Identities = 116/190 (61%), Positives = 149/190 (78%)
Frame = +3
Query: 108 SKNTASRXRDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQI 287
SK + R+ I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI
Sbjct: 54 SKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 113
Query: 288 NNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEK 467
NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KLN +R +T NS++++
Sbjct: 114 FNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQ 173
Query: 468 RLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRE 647
L K IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE
Sbjct: 174 GLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRE 233
Query: 648 DKVNELLRRM 677
+ +NEL+RRM
Sbjct: 234 NFINELVRRM 243
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 258 bits (633), Expect = 5e-69
Identities = 116/190 (61%), Positives = 149/190 (78%)
Frame = +3
Query: 108 SKNTASRXRDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQI 287
SK + R+ I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI
Sbjct: 54 SKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 113
Query: 288 NNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEK 467
NGVF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KLN +R +T NS++++
Sbjct: 114 FNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQ 173
Query: 468 RLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRE 647
L K IICVEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE
Sbjct: 174 GLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRE 233
Query: 648 DKVNELLRRM 677
+ +NEL+RRM
Sbjct: 234 NFINELVRRM 243
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 256 bits (627), Expect = 3e-68
Identities = 114/190 (60%), Positives = 149/190 (78%)
Frame = +3
Query: 108 SKNTASRXRDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQI 287
SK A + ++ I L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI
Sbjct: 52 SKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQI 111
Query: 288 NNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEK 467
NGVF+++NKAT+NMLR EPY+ +G+PNLKSV+EL+YKRG+ KLN +R+ +T NS++E+
Sbjct: 112 FNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQ 171
Query: 468 RLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRE 647
L K IIC EDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE
Sbjct: 172 ALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRE 231
Query: 648 DKVNELLRRM 677
+ +NEL+RRM
Sbjct: 232 NFINELIRRM 241
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 152 bits (369), Expect = 5e-37
Identities = 72/196 (36%), Positives = 119/196 (60%), Gaps = 2/196 (1%)
Frame = +3
Query: 96 PNNMSKNTASRXRDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFR 275
P + ++ D IR+ ++ + + P ++ L F+IRI+G N + PK +++L +
Sbjct: 52 PEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQ 111
Query: 276 LRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNS 455
L+ + GVF + + L +PY+ +GYPN KSV++L+YK+G + G VP+T N+
Sbjct: 112 LKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNN 171
Query: 456 LIEKRLSKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG--WRKKTIHYVDGG 629
+IE+ L + I+ +EDL++EI VG+ F+ FL P KLN P RKK + + +GG
Sbjct: 172 IIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQV-FSEGG 230
Query: 630 DFGNREDKVNELLRRM 677
D GNREDK+N+L+ +M
Sbjct: 231 DTGNREDKINDLISKM 246
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 30.3 bits (65), Expect = 3.5
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = -3
Query: 545 VLELLTDSKYLMDEILNADDVL----FAKSLLDE*VGGDRDTLPVQFGETAFVHQLSDTL 378
V ELL+++ L DE+L DDVL F SLL E RD V L TL
Sbjct: 2031 VQELLSENLNLHDELLRKDDVLKGLSFDLSLLQESASNSRDKKDETKEIMVHVEALEKTL 2090
Query: 377 QVGVAPCNIGLSDTKHVHCGLVETNE 300
+ +S + + L E+ E
Sbjct: 2091 ALKTFELEDAVSHAQMLEVRLQESKE 2116
>At2g35540.1 68415.m04353 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226:
DnaJ domain
Length = 575
Score = 30.3 bits (65), Expect = 3.5
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -1
Query: 574 SLNGHRKLLAYLNFSPTVNISWMRSSTQMMFCLLSLFSMSELEVIGTRFPFS 419
SLN + +++L+F ISWM+ S+ M C F +SE +I PFS
Sbjct: 396 SLNPFKVWISWLDFESEKLISWMKISSSHMPC--GRFRVSEKALIEQVKPFS 445
>At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 6.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 540 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 635
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 6.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 540 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 635
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 29.5 bits (63), Expect = 6.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 244 GDTWLTPRIRMTNASLASPGT 182
G TW+ P I +N S+ SPGT
Sbjct: 138 GGTWIQPEIEESNKSMFSPGT 158
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 29.1 bits (62), Expect = 8.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 417 KLNGKRVPITSNSLIEKRLSKQNIICVEDL 506
K+N + + S IEK LS N+ C+E L
Sbjct: 438 KMNNNTISVDSTICIEKHLSAMNLRCIERL 467
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,916,472
Number of Sequences: 28952
Number of extensions: 480733
Number of successful extensions: 1036
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4028931456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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