Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D09_e164_07.seq
         (1493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   3.8  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    27   6.7  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 24/88 (27%), Positives = 33/88 (37%)
 Frame = +1

Query: 151 SKPTTENDLTEGRGIGSTIWGWITYPFTWWYETGQTPVNDQLVQSSTYGPYEVTEIGKPN 330
           S P T   LT      ST   + + P T       TP+      +ST  PY  T +   N
Sbjct: 460 STPVTSTPLTTTNCTTSTSIPYTSTPVT------STPLTTTNCTTSTSVPYTSTPVTSSN 513

Query: 331 ITVSCNDQTCTTTKCDINGCRNITCNIY 414
            T+S +    T+T      C   T  +Y
Sbjct: 514 YTIS-SSTPVTSTPVTTTNCTTSTSVLY 540



 Score = 27.5 bits (58), Expect = 5.0
 Identities = 25/91 (27%), Positives = 35/91 (38%)
 Frame = +1

Query: 142 ISLSKPTTENDLTEGRGIGSTIWGWITYPFTWWYETGQTPVNDQLVQSSTYGPYEVTEIG 321
           IS S P T   +T      ST   + + P T       TP+      +ST  PY  T + 
Sbjct: 516 ISSSTPVTSTPVTTTNCTTSTSVLYTSTPVT------STPLATTNCTTSTSVPYTSTPVT 569

Query: 322 KPNITVSCNDQTCTTTKCDINGCRNITCNIY 414
             N T+S +    T+T      C   T  +Y
Sbjct: 570 SSNYTIS-SSTPVTSTPVTTTNCTTSTSVLY 599


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 674 SVSSFDVCTSLITVDDSKASKAKGCSSTTGLLSFCVDGNVDVAMIALV 531
           S+ S   C SL++ D  K ++  G    T     CV   +D A ++ +
Sbjct: 367 SIVSVQWCISLLSSDPDKYARYAGLYKGTQAAGMCVSFGIDAAGVSFL 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,645,884
Number of Sequences: 5004
Number of extensions: 87838
Number of successful extensions: 169
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 834495254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)