Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D09_e164_07.seq
         (1493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0233 - 15656930-15656998,15657459-15657591,15657677-156577...    36   0.062
07_01_0474 + 3579653-3579821,3580407-3580744                           31   2.3  
05_01_0019 - 129767-129931,130078-130257,130491-130728,130833-13...    29   9.5  

>03_03_0233 -
           15656930-15656998,15657459-15657591,15657677-15657729,
           15658640-15658690,15658790-15658859,15659009-15659223,
           15660465-15660570,15660686-15660753,15660861-15661148,
           15661253-15661408,15661450-15661544,15661632-15661788
          Length = 486

 Score = 36.3 bits (80), Expect = 0.062
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
 Frame = +1

Query: 97  PKSLFVAIFLTCFIHISLSKPTTENDLTEGRGIGSTIWGWI-----TYPFTWWYETGQ 255
           P +L   +FL C +H   +    ++DLT G G GS +WG++      + F W+Y++ Q
Sbjct: 10  PLALLALLFL-CLLHGERAA-AADDDLTSGTGDGSELWGYVQVRPKAHLFWWYYKSPQ 65


>07_01_0474 + 3579653-3579821,3580407-3580744
          Length = 168

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
 Frame = +1

Query: 211 GW-ITYPFTWWYETGQTPVNDQLVQSSTYGPYEVTEIGKPNITVSCNDQTCT-------- 363
           GW + YP T W +     + D+LV + T G + VTE+       +CN Q  T        
Sbjct: 34  GWTLEYPSTNWADGKSFQIGDKLVFTYTKGKHTVTEVDGAAFH-ACNRQGNTLMTWNSGN 92

Query: 364 -TTKCDINGCRNITCNIYDTDLTGICREYNTIKPEEISPSNKP 489
            T   D  G R   CN+ +    G+    +   P   +P++ P
Sbjct: 93  DTVALDKAGKRWFFCNVDNHCELGMKLVVDVADPNAPAPASPP 135


>05_01_0019 -
           129767-129931,130078-130257,130491-130728,130833-131236,
           131284-131427,131709-131995,132071-132150,132563-132714,
           132793-132909,133292-133450,133546-133946,134106-134423,
           135050-135095,135203-135310
          Length = 932

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 391 RNITCNIYDTDLTGICREYNTIK 459
           RNIT NI D+DLT + ++Y  I+
Sbjct: 275 RNITANIEDSDLTVLFQQYGDIR 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,333,748
Number of Sequences: 37544
Number of extensions: 539503
Number of successful extensions: 1011
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4780068496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)