Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D09_e164_07.seq
         (1493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28173| Best HMM Match : Sugar_tr (HMM E-Value=0.022)                33   0.78 
SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   1.0  
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             31   3.1  
SB_4343| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-19)                29   9.6  
SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  

>SB_28173| Best HMM Match : Sugar_tr (HMM E-Value=0.022)
          Length = 453

 Score = 32.7 bits (71), Expect = 0.78
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +1

Query: 307 VTEIGKPNITVSCNDQTCTTTKCDINGCRNITCNIYDTDLTGICREYNTI 456
           V  +G PN   S  + TC  +KC    C N T   +D   T I  E+N I
Sbjct: 63  VFAMGTPNFHCSDENSTCPQSKC----CDNCTSYTFDGPFTSIVSEWNLI 108


>SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +1

Query: 334 TVSCNDQTCTTTKCDINGCRNITCNIYDTDLTGICR--EYNTIKPEEISPSNKPVSE 498
           T  CN   C T +C+   C    CN    + T  C   + NT +  + S +   V+E
Sbjct: 259 TAQCNTTECNTAQCNTTQCNTAQCNTTQCNTTQCCNTTQCNTTQCNKHSVTQYRVTE 315



 Score = 31.1 bits (67), Expect = 2.4
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 334 TVSCNDQTCTTTKCDINGCRNITCNIYDTDLTGICREYNTIK 459
           T+ CN   C T +C+   C    CN    +      + NTI+
Sbjct: 190 TIQCNTLQCNTIQCNTTQCNTTQCNTIQGNTARNTAQCNTIQ 231


>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1120

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = -1

Query: 695  SYCFIVVSVSSFDVCTSLITVDDSKASKAKGCSSTTGLLSFCVDGNVDVAMIALVVV 525
            SY  +    S  +V  S     DSKA  +KG SSTT +   CV   + V ++A+VVV
Sbjct: 924  SYGGMTFVTSPQEVQASAQYSSDSKAVSSKGMSSTT-IALICVFVALAVVVVAIVVV 979


>SB_4343| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-19)
          Length = 898

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 310 TEIGKPNITVSCNDQTCTTTKCDI 381
           TE G+ NI +SC D+  T  KC +
Sbjct: 343 TENGRANIVLSCEDRKVTNLKCKL 366


>SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 328 NITVSCNDQTCTTTKCDINGCRNITCNIYDTDLTGIC 438
           ++T SC+   C  T C    C    C+  D  +T  C
Sbjct: 269 HVTNSCHTTDCHATNCHNTDCHVTNCHTTDCHVTNSC 305



 Score = 29.1 bits (62), Expect = 9.6
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 334 TVSCN-DQTCTTTKCDINGCRNITCNIYDTDLTGICREYN 450
           T  C+   +C TT C +  C N  C++ ++  T  C   N
Sbjct: 296 TTDCHVTNSCHTTDCHVTNCHNTDCHVTNSCHTTDCHVTN 335


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,873,030
Number of Sequences: 59808
Number of extensions: 649048
Number of successful extensions: 1544
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4835964124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)