Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D09_e164_07.seq
         (1493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    33   0.52 
AF024493-3|AAB70322.2|  319|Caenorhabditis elegans Hypothetical ...    30   4.9  

>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 33.1 bits (72), Expect = 0.52
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
 Frame = +1

Query: 154 KPTTENDLTEGRGIGSTIWGWITYPFTWWYETGQT--PVNDQLVQSSTYGPYEVTEI--- 318
           K T    + EG  + + +WG   Y  T      QT     DQ V  +T G +++ ++   
Sbjct: 459 KNTWNVRIYEGDDVWAVLWGVYGYNNTTSTTCVQTHDSARDQ-VMWTTCGIWKLCQMCRT 517

Query: 319 ----GKPNITVSCNDQTCTTTKCDINGCRNITCNIYDTDLTGICREYNTIKPEEISPSNK 486
                +PN  V  ND        + +GCR I     D D + +  +Y+ I P++   ++ 
Sbjct: 518 WIKASRPNEIVGSNDDFFCCENVNHHGCRTIVAE--DNDFSKLPEKYDHILPQKRLTNSA 575

Query: 487 PVSEPIQDGL 516
           P S   Q+ +
Sbjct: 576 PSSSDSQNSI 585


>AF024493-3|AAB70322.2|  319|Caenorhabditis elegans Hypothetical
           protein F23F1.3 protein.
          Length = 319

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +1

Query: 280 QSSTYGPYEVTEIGKPNITVSCNDQTCTTTKCDINGC 390
           +++   P+++  +G  ++ +  ND+T T ++ DI GC
Sbjct: 38  KTAKLAPFKLENVGLSDLYIEVNDRTWTLSETDIIGC 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,889,296
Number of Sequences: 27780
Number of extensions: 503944
Number of successful extensions: 1158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4297958014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)