Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D09_e164_07.seq
         (1493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02205.2 68414.m00154 CER1 protein identical to maize gl1 hom...    30   3.4  
At1g02205.1 68414.m00153 CER1 protein identical to maize gl1 hom...    30   3.4  

>At1g02205.2 68414.m00154 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 625

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -3

Query: 384 IYVTFSSSTCLVVARYCYIGFADFSNFIGSICR*LNKLIVDRRLSCFIPPSKRICYPTPY 205
           +  T  + T  +++   YI + DF N +G  C   N  ++ +RL    PP K +CY   Y
Sbjct: 192 LLTTLLTKTASIISFAGYIIYIDFMNNMGH-C---NFELIPKRLFHLFPPLKFLCYTPSY 247


>At1g02205.1 68414.m00153 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 580

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -3

Query: 384 IYVTFSSSTCLVVARYCYIGFADFSNFIGSICR*LNKLIVDRRLSCFIPPSKRICYPTPY 205
           +  T  + T  +++   YI + DF N +G  C   N  ++ +RL    PP K +CY   Y
Sbjct: 192 LLTTLLTKTASIISFAGYIIYIDFMNNMGH-C---NFELIPKRLFHLFPPLKFLCYTPSY 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,331,162
Number of Sequences: 28952
Number of extensions: 453880
Number of successful extensions: 863
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3980738496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)