Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D08_e156_08.seq
         (1513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||...    88   3e-18
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    27   5.1  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    27   8.9  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    27   8.9  

>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 289

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 40/97 (41%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
 Frame = +3

Query: 81  LLKYSAKEYMFRAALCHLCV-DLLNAQHALEKYAGLYPAFADTREYKLVKELIEHLEEQN 257
           LLK+S K+Y+ +A LC++   D +  + ALE +  + P+FA TREY+L+K+L + +E  +
Sbjct: 190 LLKWSVKDYLLKAGLCYMANGDEIATRRALEHFLEIDPSFASTREYQLLKDLQDTIEASD 249

Query: 258 VDAFTEAVKTYDSISRLDQWYTTMLVRIKKQINDNPD 368
            + F + V TYD +S+LD W TT+L++IK  I +  D
Sbjct: 250 ANMFADKVFTYDQLSKLDSWKTTILLKIKSSIQEAED 286


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 690 YILEKKLSLFFIHLSNCYLN 631
           +I++K+  LFFIHL +C  N
Sbjct: 93  WIVDKEYRLFFIHLKDCLSN 112


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = -1

Query: 346 FLIRTSIVVY-----HWSSLDILSYVLTASVNASTFCSSRCSINSLTSLYSLVSAK 194
           FL   SI++Y     H  +LD+   +L     A ++C+S  SI+  T  Y ++ A+
Sbjct: 717 FLSTVSIILYRRLSRHQDALDVYLKILNDWEGALSYCNSVYSIDGETEPYYMLLAE 772


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +3

Query: 222 VKELIEHLEEQNVDAFTEAVKTYDSISRLDQWYTTMLVRIKKQIND 359
           V EL+  L   +V+   EA     S SRL Q Y +ML  + K +ND
Sbjct: 419 VAELLYSLSMLSVNV-VEAEPVARSASRLAQDYVSMLQNLCKTVND 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,092,718
Number of Sequences: 5004
Number of extensions: 71811
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 846388298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)