Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D08_e156_08.seq
         (1513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1083 + 11096520-11096664,11097543-11097592,11097682-110977...    90   4e-18

>08_01_1083 +
           11096520-11096664,11097543-11097592,11097682-11097754,
           11099122-11099201,11099354-11099505,11100653-11100812,
           11100886-11100933,11101118-11101198,11101517-11101597
          Length = 289

 Score = 90.2 bits (214), Expect = 4e-18
 Identities = 40/100 (40%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
 Frame = +3

Query: 72  HEGLLKYSAKEYMFRAALCHLCV-DLLNAQHALEKYAGLYPAFADTREYKLVKELIEHLE 248
           +  LLKYS +  +  A +C LC  D++   +++E+Y  + P F+ TREYKL+ +L   +E
Sbjct: 184 NNNLLKYSVRGILLNAGICQLCRGDVVAITNSMERYQDIDPTFSGTREYKLLSDLAAAME 243

Query: 249 EQNVDAFTEAVKTYDSISRLDQWYTTMLVRIKKQINDNPD 368
           E +V  FT+A+K +DS++RLD W TT+L+R K ++    D
Sbjct: 244 EGDVAKFTDAIKEFDSMTRLDPWKTTLLLRAKNELKKKED 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,858,360
Number of Sequences: 37544
Number of extensions: 433071
Number of successful extensions: 768
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4849681144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)