Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D08_e156_08.seq
         (1513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46161| Best HMM Match : No HMM Matches (HMM E-Value=.)             151   1e-36
SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12)                 30   4.2  
SB_46399| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.2  
SB_43487| Best HMM Match : K-box (HMM E-Value=0.79)                    30   5.6  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   5.6  
SB_5539| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.033)           29   9.7  

>SB_46161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score =  151 bits (366), Expect = 1e-36
 Identities = 67/97 (69%), Positives = 83/97 (85%)
 Frame = +3

Query: 81  LLKYSAKEYMFRAALCHLCVDLLNAQHALEKYAGLYPAFADTREYKLVKELIEHLEEQNV 260
           +LKYSAK+Y F+AALCH+CVD+L AQ A+EKY  ++ AF D+RE KL++ L+E  EEQNV
Sbjct: 159 ILKYSAKDYFFKAALCHMCVDVLEAQRAVEKYCDMHAAFQDSRECKLLRSLLEAQEEQNV 218

Query: 261 DAFTEAVKTYDSISRLDQWYTTMLVRIKKQINDNPDL 371
           +AFTEAVK YDSISR+DQW TTML+RIKK +NDNPDL
Sbjct: 219 EAFTEAVKEYDSISRIDQWLTTMLLRIKKSMNDNPDL 255


>SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12)
          Length = 567

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +3

Query: 72  HEGLLKYSAKEYMFRAALCHLCVDLLNAQHALEKYAGLYPAFADTRE-YKLVKELIEHLE 248
           +E   ++  + Y   A       +L N Q ALE Y G++  F D  E  K +  +   L 
Sbjct: 345 YEKAREFYQEAYNVEATCTEALFNLGNYQQALETYKGIHQKFPDNVECLKFLVRICTDLG 404

Query: 249 EQNVDAFTEAVKTYDSISRLDQ 314
            ++V  + + +K  +    L Q
Sbjct: 405 LKDVQEYAQKLKKAEKARELKQ 426


>SB_46399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
 Frame = +3

Query: 57  LQXIRHEGLLKYSAKEYMFRAALCHLCVDLLNAQHALEKYAGLY-------PAFADTREY 215
           LQ +  + L++ S    +   AL    + L+ +QH L++++           A +DT E+
Sbjct: 193 LQPVIEQSLMQQSEIGVISTMALMRRNLSLITSQHLLKEFSMFLLGESKKPEAMSDTGEH 252

Query: 216 KLVKELIEHLEEQNVDAFTEAVKTYDSI 299
           KL ++LIE  +  + +   E +K ++++
Sbjct: 253 KLRQKLIELCDHLSDELSIETLKLFETL 280


>SB_43487| Best HMM Match : K-box (HMM E-Value=0.79)
          Length = 243

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 210 EYKLVKELIEHLEEQNVDAFTEAVKTYDSISRLDQWYTTMLVRIKKQINDN 362
           E   ++ELI+ LEE  V    + V  Y+ +S+ D+ YT+  +     IN+N
Sbjct: 167 ELDKLQELIDQLEEA-VKTKEDKVYGYEQVSQRDEDYTSKDINNNNNINNN 216


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = +3

Query: 147  LNAQHALEKYAGLYPAFADTREYKLVKELIEH--LEEQNVDAFTEAVKTYDSISRLDQWY 320
            +N Q  L+ YAG+YP   D  EY  ++  +E   L + +V +  ++   YD       ++
Sbjct: 2068 INQQDILKVYAGVYP--VDQSEYVFLRNALEKLTLNDASVTSHPDSCFDYDD----HGYH 2121

Query: 321  TTMLVRIKKQIN 356
             T +VR+   IN
Sbjct: 2122 ATRIVRMDILIN 2133


>SB_5539| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.033)
          Length = 551

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 130 WQSAALNMYSLALYFNRPSCRIXCSPGXYH*XLERPPPR 14
           W    L  Y +  Y+ R      CSPG     LERPPPR
Sbjct: 408 WYEFLLVSYGINAYWYRMVSSNSCSPGD-PLVLERPPPR 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,401,001
Number of Sequences: 59808
Number of extensions: 530485
Number of successful extensions: 986
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4906390786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)