Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D08_e156_08.seq
         (1513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53180-5|AAA96287.3|  295|Caenorhabditis elegans Hypothetical pr...   109   4e-24
U28735-1|AAG38886.2|  272|Caenorhabditis elegans Hypothetical pr...    33   0.40 
Z70312-6|CAA94387.1|  807|Caenorhabditis elegans Hypothetical pr...    30   3.7  
Z70309-14|CAA94363.1|  807|Caenorhabditis elegans Hypothetical p...    30   3.7  

>U53180-5|AAA96287.3|  295|Caenorhabditis elegans Hypothetical
           protein D1014.3 protein.
          Length = 295

 Score =  109 bits (263), Expect = 4e-24
 Identities = 49/99 (49%), Positives = 69/99 (69%), Gaps = 2/99 (2%)
 Frame = +3

Query: 84  LKYSAKEYMFRAALCHLCVDLLNAQHALEKYAGLYPAFADTREYKLVKELIEHLEEQNVD 263
           LKY+AK + F+A LCHLC+D +N Q AL+KY    P+F D+RE K VKEL+  ++E+  +
Sbjct: 197 LKYAAKGHFFQALLCHLCIDPINTQQALQKYENASPSFTDSRECKFVKELLAAIDEKKEE 256

Query: 264 AFTEAVKTYDSISRLDQWYTTMLVRIKKQI--NDNPDLR 374
            FTE V  +D ISRLD W T++L+++K+ I   D  DLR
Sbjct: 257 TFTECVANFDKISRLDNWSTSLLLKVKRTIEGEDEDDLR 295


>U28735-1|AAG38886.2|  272|Caenorhabditis elegans Hypothetical
           protein F48E3.9 protein.
          Length = 272

 Score = 33.5 bits (73), Expect = 0.40
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +3

Query: 165 LEKYAGLYPAFADTREYKLV----KELIEHLEEQNVDAFTEAVKTYDSISRLDQWYTTML 332
           LE    ++     TREY+L     K+LI+ + E+N     E  K    +SRL+    T  
Sbjct: 104 LENQERIHAYIQQTREYELTQINDKKLIDKVIEENSSLIKENAKVSTKLSRLESVDYTYK 163

Query: 333 VRIKKQINDNPDL 371
            R  K+  +N DL
Sbjct: 164 QRELKEAQNNSDL 176


>Z70312-6|CAA94387.1|  807|Caenorhabditis elegans Hypothetical
           protein ZC168.1 protein.
          Length = 807

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 132 LCVDLLNAQHALEKYAGLYPAFADTREYKLVKELIEHLEEQNVDA 266
           +C+   N  H +++ AG   +F   R  KL K L  H E ++V A
Sbjct: 446 ICLGACNVAHVVKENAGFSRSFVTRRGGKLKKPLQVHYETEDVTA 490


>Z70309-14|CAA94363.1|  807|Caenorhabditis elegans Hypothetical
           protein ZC168.1 protein.
          Length = 807

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 132 LCVDLLNAQHALEKYAGLYPAFADTREYKLVKELIEHLEEQNVDA 266
           +C+   N  H +++ AG   +F   R  KL K L  H E ++V A
Sbjct: 446 ICLGACNVAHVVKENAGFSRSFVTRRGGKLKKPLQVHYETEDVTA 490


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,868,281
Number of Sequences: 27780
Number of extensions: 401052
Number of successful extensions: 867
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4360398082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)