Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D07_e148_07.seq
         (1537 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   1.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   6.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 222 YYIICFLFYLLCVTFYFKYIFL 157
           YY +  LF+LLC+ +YF   F+
Sbjct: 134 YYFVVPLFFLLCI-YYFYCAFI 154



 Score = 24.2 bits (50), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 222 YYIICFLFYLLCVTFYFKYIFL 157
           YY  C L  LLC+ +YF   F+
Sbjct: 286 YYFYCALIILLCI-YYFCRAFI 306



 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 219 YIICFLFYLLCVTFYFKYIFL 157
           +II  + +LLC T+YF Y F+
Sbjct: 89  FIIFTVHFLLC-TYYFYYAFI 108



 Score = 22.6 bits (46), Expect = 7.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 222 YYIICFLFYLLCVTFYFKYIFL 157
           YY       LLCV +YF Y F+
Sbjct: 101 YYFYYAFIILLCV-YYFYYAFI 121


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 554 RIICLMSSS*NRYCTDINCFHKCHISICY 640
           +++ L     N  C DI   H+CH S  Y
Sbjct: 148 KVVPLKKLCNNGTCEDIGNSHRCHCSDGY 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,526
Number of Sequences: 336
Number of extensions: 3202
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 46193675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)