Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D07_e148_07.seq
         (1537 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    38   0.001

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 1/151 (0%)
 Frame = +1

Query: 73   ARGXNWRSKKANETKEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKA 252
            A G   R ++    +ED++  + +  + +KN  K E D E +K E  ++      A+++A
Sbjct: 779  ADGKGHRERELKSAEEDLKRSKKKSEESRKNWKKHEQDFETLKLEIEELQKGIVTAKEQA 838

Query: 253  RQLRQDFKRTNSSLAERVSQTSNTRERAQLLLNRATKLASDTQMQLKLLANMEDLYNDHN 432
             +L +        L E VS T++    A   L +  K     Q + K+ +  ++L   ++
Sbjct: 839  VKLEEQIAALQQRLVE-VSGTTDEMTAAVTALKQQIK-----QHKEKMNSQSKELKAKYH 892

Query: 433  DQLNLLEKEIGDLNTQMNYYLSEITK-RSDN 522
             +  LL K+  +L  ++    +EITK R++N
Sbjct: 893  QRDKLL-KQNDELKLEIKKKENEITKVRNEN 922



 Score = 33.9 bits (74), Expect = 0.013
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = +1

Query: 109 ETKEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLR-AEGAEQKARQLR---QDFK 276
           +TKE++E L  ++  LQK I++      Q   +  D+  + A+G   + R+L+   +D K
Sbjct: 738 QTKEEIEELNKKIETLQKTIVEARETQTQCSAKVKDLQAKIADGKGHRERELKSAEEDLK 797

Query: 277 RTNSSLAE 300
           R+     E
Sbjct: 798 RSKKKSEE 805


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 929,990
Number of Sequences: 2352
Number of extensions: 12726
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 180439380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)