Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_D07_e148_07.seq
(1537 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 40 0.006
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 37 0.031
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 36 0.071
At4g09950.1 68417.m01628 avirulence-responsive family protein / ... 35 0.16
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 34 0.22
At2g37080.1 68415.m04550 myosin heavy chain-related low similari... 34 0.22
At2g46180.1 68415.m05742 intracellular protein transport protein... 33 0.38
At1g67170.1 68414.m07641 expressed protein similar to enterophil... 33 0.50
At5g41140.1 68418.m05001 expressed protein 33 0.66
At5g25070.1 68418.m02971 expressed protein 33 0.66
At2g33090.1 68415.m04057 expressed protein ; expression supporte... 32 1.2
At5g12120.1 68418.m01423 ubiquitin-associated (UBA)/TS-N domain-... 31 2.0
At3g58650.1 68416.m06537 expressed protein 31 2.0
At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911... 31 2.0
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 31 2.0
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 31 2.7
At2g32240.1 68415.m03940 expressed protein contains Pfam profile... 31 2.7
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 31 2.7
At5g24880.1 68418.m02946 expressed protein ; expression supporte... 30 4.7
At3g12190.1 68416.m01520 hypothetical protein 30 4.7
At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein co... 30 4.7
At5g27220.1 68418.m03247 protein transport protein-related low s... 29 6.2
At4g18240.1 68417.m02709 starch synthase-related protein contain... 29 6.2
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 29 6.2
At3g02710.1 68416.m00262 nuclear associated protein-related / NA... 29 6.2
At2g30690.1 68415.m03742 expressed protein contains Pfam profile... 29 6.2
At1g55170.1 68414.m06301 expressed protein 29 6.2
At5g07660.1 68418.m00877 structural maintenance of chromosomes (... 29 8.2
At1g69545.1 68414.m07997 leucine-rich repeat family protein cont... 29 8.2
At1g09470.1 68414.m01059 expressed protein ; expression supporte... 29 8.2
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 39.5 bits (88), Expect = 0.006
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Frame = +1
Query: 145 LSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQDFKRTNSSLAERVSQTSNT 324
L D ++ + ++E + +E+ + R E A+ ++ L + K L +
Sbjct: 232 LHDAREKLEQVEVARTKASEESTKMYDRVEKAQDDSKSLDESLKELTKELQTLYKEKETV 291
Query: 325 RERAQLLLNRATKLASDTQ-MQLKLLANMEDLYNDHNDQLNLLEKEIGD 468
+ L + TKL D + Q ++ N++ ND +QLN +E+E+ D
Sbjct: 292 EAQQTKALKKKTKLELDVKDFQDRITGNIQSK-NDALEQLNTVEREMQD 339
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 37.1 bits (82), Expect = 0.031
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Frame = +1
Query: 115 KEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQDFKRTNSSL 294
K++ L +++D+QK +L+ E+ + QE + E E ++L D+K+ L
Sbjct: 250 KQEKPALLNQINDVQKALLEQEAAYNTLSQEHKQINGLFEEREATIKKLTDDYKQAREML 309
Query: 295 AERVSQTSNTRERAQLLLNRATKLASDTQMQLKLLANMEDLYND---HNDQLNLLEKEIG 465
E +S+ T R Q +AS + L +E L N+ D++ L +++
Sbjct: 310 EEYMSKMEETERRMQ---ETGKDVASRESAIVDLEETVESLRNEVERKGDEIESLMEKMS 366
Query: 466 DLNTQM 483
++ ++
Sbjct: 367 NIEVKL 372
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 35.9 bits (79), Expect = 0.071
Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 12/160 (7%)
Frame = +1
Query: 94 SKKANETKEDVEGLRLRLSDLQKNILKIES-------DAEQVKQEANDVVLRAEGAEQKA 252
SK N K+ + RL DL+KNI I++ D + + E +V+ E +Q+
Sbjct: 772 SKLENSIKDHDKNREGRLKDLEKNIKTIKAQMQAASKDLKSHENEKEKLVMEEEAMKQEQ 831
Query: 253 RQLRQDFKRTNSSLAERVSQTSNTRERAQLLLNRATKLASDTQMQLKLL-ANMED----L 417
L + ++ S+ R + L K+ ++ +LKL+ A M++ +
Sbjct: 832 SSLESHLTSLETQISTLTSEVDEQRAKVDAL----QKIHDESLAELKLIHAKMKECDTQI 887
Query: 418 YNDHNDQLNLLEKEIGDLNTQMNYYLSEITKRSDNYRSCT 537
DQ L+K + D+ + +E+ + +++ C+
Sbjct: 888 SGFVTDQEKCLQK-LSDMKLERKKLENEVVRMETDHKDCS 926
>At4g09950.1 68417.m01628 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
Pfam PF04548: AIG1 family;
Length = 336
Score = 34.7 bits (76), Expect = 0.16
Identities = 20/120 (16%), Positives = 64/120 (53%), Gaps = 6/120 (5%)
Frame = +1
Query: 145 LSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQDFKRTNSSLAERVSQ--TS 318
++DL + + E+ ++ +++ + ++ ++Q+ Q++++ +++++ + E + + ++
Sbjct: 213 MADLSHELRENEATIKEKQKQIEE--MKGWSSKQEISQMKKELEKSHNEMLEGIKEKISN 270
Query: 319 NTRERAQLLLNRATKLASDTQMQLKLLANMEDLYNDH----NDQLNLLEKEIGDLNTQMN 486
+E + + + K ++ + K + ++ L +D +QLN EKE L T++N
Sbjct: 271 QLKESLEDVKEQLAKAQAEREETEKKMNEIQKLSSDEIRRLREQLNKAEKETASLRTELN 330
>At5g48600.1 68418.m06011 structural maintenance of chromosomes (SMC)
family protein similar to SP|P50532 Chromosome assembly
protein XCAP-C {Xenopus laevis}; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 34.3 bits (75), Expect = 0.22
Identities = 26/136 (19%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Frame = +1
Query: 106 NETKEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQDFKRTN 285
N +E + + L K I + + E+++ E ++ + + QKA ++++ +K+T
Sbjct: 863 NRCNVQIETNQKLIKKLTKGIEEATREKERLEGEKENLHVTFKDITQKAFEIQETYKKTQ 922
Query: 286 SSLAERVSQTSNTRERAQLLLNRATKL-ASDTQMQLKLLANMEDLYNDHNDQLNLLEKEI 462
+ E + + + L +L AS + K + +M+ YN+ + +K++
Sbjct: 923 QLIDEHKDVLTGAKSDYENLKKSVDELKASRVDAEFK-VQDMKKKYNELEMREKGYKKKL 981
Query: 463 GDLNTQMNYYLSEITK 510
DL ++ +I K
Sbjct: 982 NDLQIAFTKHMEQIQK 997
Score = 32.3 bits (70), Expect = 0.87
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 19/141 (13%)
Frame = +1
Query: 115 KEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQDFKRTNSSL 294
K D E L+ + +L+ + + E + +K++ N++ +R +G ++K L+ F + +
Sbjct: 936 KSDYENLKKSVDELKASRVDAEFKVQDMKKKYNELEMREKGYKKKLNDLQIAFTKHMEQI 995
Query: 295 A------ERVSQT---SNTRERAQLLLNRATKLASDTQMQLKLL-ANME---------DL 417
+++ T +N E L RA ++ + + QLK L N++ +L
Sbjct: 996 QKDLVDPDKLQATLMDNNLNEACDL--KRALEMVALLEAQLKELNPNLDSIAEYRSKVEL 1053
Query: 418 YNDHNDQLNLLEKEIGDLNTQ 480
YN D+LN + +E D Q
Sbjct: 1054 YNGRVDELNSVTQERDDTRKQ 1074
>At2g37080.1 68415.m04550 myosin heavy chain-related low similarity
to myosin heavy chain [Rana catesbeiana] GI:4249701
Length = 583
Score = 34.3 bits (75), Expect = 0.22
Identities = 30/128 (23%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
Frame = +1
Query: 94 SKKANETKEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQDF 273
+ + ++ +E+++ + +LS + + + AE+ KQ+ ++ + + R+L Q+
Sbjct: 80 ASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQER 139
Query: 274 KRTNSSLAERVSQTSNTRERAQL--LLNRATKLASDTQMQLKLLANMEDLYNDHNDQLNL 447
+ S E + Q + + A L +N KL + QL N+E+L + N+ L+L
Sbjct: 140 DKAWQSELEAM-QRQHAMDSAALSSTMNEVQKLKA----QLSESENVENLRMELNETLSL 194
Query: 448 LEKEIGDL 471
+EK G+L
Sbjct: 195 VEKLRGEL 202
>At2g46180.1 68415.m05742 intracellular protein transport protein
USO1-related similar to Intracellular protein transport
protein USO1 (Swiss-Prot:P25386) [Saccharomyces
cerevisiae]
Length = 725
Score = 33.5 bits (73), Expect = 0.38
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +1
Query: 97 KKANET-KEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQL-RQD 270
+K NET KE+++ LRL K+ + + E + ++ G EQ A + R++
Sbjct: 224 RKQNETFKEELQSLRLDKEKTLMESNKVRRELDAKLAEIRQLQMKLNGGEQHAFGISREN 283
Query: 271 FKRTNSSLAERVSQTSNTRERAQLLLNRATKLAS 372
K N +L + ++ R + L + K S
Sbjct: 284 LKEVNKALEKENNELKLKRSELEAALEASQKSTS 317
>At1g67170.1 68414.m07641 expressed protein similar to
enterophilin-2L (GI:12718845) [Cavia porcellus]; similar
to Hyaluronan mediated motility receptor (Intracellular
hyaluronic acid binding protein) (Receptor for
hyaluronan-mediated motility) (CD168 antigen)
(Swiss-Prot:O75330) [Homo sapiens]
Length = 359
Score = 33.1 bits (72), Expect = 0.50
Identities = 26/144 (18%), Positives = 64/144 (44%), Gaps = 3/144 (2%)
Frame = +1
Query: 106 NETKEDVEGLRLRLSDLQKNILKIES---DAEQVKQEANDVVLRAEGAEQKARQLRQDFK 276
+E ++ + GL +++ ++ + K E+ + +Q + EA +V+ E K QL Q+ +
Sbjct: 109 SEREQRMMGLAEKVAKMETELQKSEAVKLEMQQARAEARSLVVAREELMSKVHQLTQELQ 168
Query: 277 RTNSSLAERVSQTSNTRERAQLLLNRATKLASDTQMQLKLLANMEDLYNDHNDQLNLLEK 456
++ S + ++ L++ L + Q + YNDH + L +EK
Sbjct: 169 KSRSDV-----------QQIPALMSELENLRQEYQQCRATYDYEKKFYNDHLESLQAMEK 217
Query: 457 EIGDLNTQMNYYLSEITKRSDNYR 528
+ ++ +++ +++ R
Sbjct: 218 NYMTMAREVEKLQAQLMNNANSDR 241
>At5g41140.1 68418.m05001 expressed protein
Length = 983
Score = 32.7 bits (71), Expect = 0.66
Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Frame = +1
Query: 97 KKANETKEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQDFK 276
++ + ++E + DL+ + ++ D E +KQE +D+ + E Q QL+ ++
Sbjct: 479 RRITDLYNEIEIYKRDKEDLEIQVEQLSLDYEILKQENHDISYKLE-QSQVQEQLKMQYE 537
Query: 277 RTNSSLAERVSQTSNTRERAQLLLNRATKLASDTQMQLK-LLANMEDLYNDHNDQLNLLE 453
+SSL V++ N E + L + K S++ ++K L ++ + + Q + E
Sbjct: 538 -CSSSLV-NVNELENHVESLEAKLKKQYKECSESLYRIKELETQIKGMEEELEKQAQIFE 595
Query: 454 KEI 462
+I
Sbjct: 596 GDI 598
>At5g25070.1 68418.m02971 expressed protein
Length = 736
Score = 32.7 bits (71), Expect = 0.66
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +1
Query: 94 SKKANETKEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVV-LRAEGAEQKARQLRQD 270
S + K +E R DL ++ +A + K++A++ + L + E+ +QL +
Sbjct: 186 SSRLELVKAQIEAKLNRSRDLAASVTSARKNAIRKKRQASENLRLASTTHEELEKQLEEA 245
Query: 271 FKRTNSSLAERVSQTSNTRERAQLLL 348
+ + AER+S++ +ER +L L
Sbjct: 246 IETEDFDAAERISESLAAKERDRLAL 271
>At2g33090.1 68415.m04057 expressed protein ; expression supported
by MPSS
Length = 248
Score = 31.9 bits (69), Expect = 1.2
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 3/156 (1%)
Frame = +1
Query: 67 NSARGXNWRSKKANETKEDVEGLRLRLSDLQKNILKIESD-AEQVKQEANDVVLRAEGAE 243
++ RG + KKA + + SDL+KN +I D A + K++ +VL+ E
Sbjct: 17 SNGRGDAYTCKKALHLTLNKPNVVKACSDLKKNEHQISRDFAAETKKKTEFLVLKKNNDE 76
Query: 244 Q-KARQLRQDFKRTNSSLAERVSQTSNTRERAQLLLNRA-TKLASDTQMQLKLLANMEDL 417
+ K ++ ++ K++ L + S T E Q L R +K +T +KL
Sbjct: 77 RSKTGEVTREKKQSALPLKLSKTPRSGTGEIKQTLKKRGLSKSVPETSRLIKLKKQPPVK 136
Query: 418 YNDHNDQLNLLEKEIGDLNTQMNYYLSEITKRSDNY 525
+D +L K D +T L EI K+S ++
Sbjct: 137 VSDKPKSCPVLTK--NDTDT---LELFEIAKKSADF 167
>At5g12120.1 68418.m01423 ubiquitin-associated (UBA)/TS-N
domain-containing protein contains Pfam profile PF00627:
UBA/TS-N domain
Length = 619
Score = 31.1 bits (67), Expect = 2.0
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 94 SKKANETKEDVEG-LRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQD 270
+K A++ + G L+L +S IL++E+ + KQ+ V+ AEG +KA + +
Sbjct: 195 AKVADKKLDPTSGNLKLDISQELGRILELETKYKCTKQDVERAVVTAEGDIEKAEEALRR 254
Query: 271 FKRTNSSLAERVSQTSNT 324
K+ S+ + + S++
Sbjct: 255 QKQDQSTASRKPEDISDS 272
>At3g58650.1 68416.m06537 expressed protein
Length = 723
Score = 31.1 bits (67), Expect = 2.0
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Frame = +1
Query: 241 EQKARQLRQDFKRTNSSLAERVSQTSNTRERAQLLLNRATKLASDTQMQL-KLLANME-- 411
EQK R+L + ++SSL + +S +++RA +++ +K + TQ L ++L E
Sbjct: 410 EQKLRELTTKIESSSSSLIQEEPLSSISKDRANAMISSPSKYSGLTQSSLDRVLTESESV 469
Query: 412 -DLYNDHNDQLNLLEKEIGDLNTQMNYYLSEITKRSDNYRSCT 537
D + N Q +K I +++ ++ +T+ D SC+
Sbjct: 470 SDCTSFFNSQKVQKQKVIQGEEQEVS-SITTLTEADDFALSCS 511
>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911:
Plant protein of unknown function (DUF869)
Length = 982
Score = 31.1 bits (67), Expect = 2.0
Identities = 25/123 (20%), Positives = 48/123 (39%)
Frame = +1
Query: 67 NSARGXNWRSKKANETKEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQ 246
N G + T E+ EGL+L + N+ E+D E K + + E+
Sbjct: 712 NGTSGYEPKLATCKFTTEEFEGLKLEKEKAESNLASCEADLEATKTKLQE-------TEK 764
Query: 247 KARQLRQDFKRTNSSLAERVSQTSNTRERAQLLLNRATKLASDTQMQLKLLANMEDLYND 426
+++ D + S +Q E + L R+++L + + N+ED +D
Sbjct: 765 LLAEVKSDLESAQKSNGMGETQLKCMVESYRSLETRSSELEIELTSLKGKIENLEDELHD 824
Query: 427 HND 435
+
Sbjct: 825 EKE 827
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 31.1 bits (67), Expect = 2.0
Identities = 17/97 (17%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = +1
Query: 139 LRLSDLQKNILK-IESDAEQVKQEANDVVLRAEGAEQKARQLRQDFKRTNSSLAERVSQT 315
L +++K++ K ++ E+++++ ++ E E++ + + + F R N + ++
Sbjct: 391 LECEEIRKSLDKELQRKIEELERQKVEIDHSEEKLEKRNQAMNKKFDRVNEKEMDLEAKL 450
Query: 316 SNTRERAQLLLNRATKLASDTQMQLKLLANMEDLYND 426
+ER +++ +L+ + Q L ++EDL +
Sbjct: 451 KTIKEREKIIQAEEKRLSLEKQQLLSDKESLEDLQQE 487
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 protein,
Xenopus laevis, PIR:T30335
Length = 1229
Score = 30.7 bits (66), Expect = 2.7
Identities = 26/126 (20%), Positives = 59/126 (46%)
Frame = +1
Query: 106 NETKEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQDFKRTN 285
N+ E+++ +R ++ + KI+ ++K +N V+L+ + E+ R + T
Sbjct: 990 NQKNEELDVIRSHKREIDAAMGKIQQSEAELK--SNIVMLKIKVDEENKRHEEEGVLCTI 1047
Query: 286 SSLAERVSQTSNTRERAQLLLNRATKLASDTQMQLKLLANMEDLYNDHNDQLNLLEKEIG 465
++ T + + + TKL S+ ++ + LA++ +D + LEKEI
Sbjct: 1048 DNILRTGKATDLLKSQEE-----KTKLQSEMKLSREKLASVRKEVDDMTKKSLKLEKEIK 1102
Query: 466 DLNTQM 483
+ T++
Sbjct: 1103 TMETEI 1108
>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
PF04508 viral A-type inclusion protein repeat
Length = 775
Score = 30.7 bits (66), Expect = 2.7
Identities = 23/128 (17%), Positives = 59/128 (46%)
Frame = +1
Query: 127 EGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQDFKRTNSSLAERV 306
+GL DL + LK+ + EAN++ + E + Q + + + +++ +
Sbjct: 440 QGLEKESGDLAEVNLKLNLELANHGSEANELQTKLSALEAEKEQTANELEASKTTIEDLT 499
Query: 307 SQTSNTRERAQLLLNRATKLASDTQMQLKLLANMEDLYNDHNDQLNLLEKEIGDLNTQMN 486
Q ++ E+ Q ++++S T+ ++ A + + + LE+++ +++ +
Sbjct: 500 KQLTSEGEKLQ------SQISSHTEENNQVNAMFQSTKEELQSVIAKLEEQLTVESSKAD 553
Query: 487 YYLSEITK 510
+SEI K
Sbjct: 554 TLVSEIEK 561
Score = 29.9 bits (64), Expect = 4.7
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Frame = +1
Query: 97 KKANETKEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQDFK 276
+K+ ++ + E L + L+ I ++E E + R E A ++ Q K
Sbjct: 325 EKSLQSSSESELLAETNNQLKIKIQELEGLIGSGSVEKETALKRLEEAIERFNQ-----K 379
Query: 277 RTNSS-LAERVSQTSNTRERAQLLLNRATKLASDTQMQLK----LLANMEDLYNDHNDQL 441
T SS L E++ N E + L + A+ +A +++L+ L N+E + +
Sbjct: 380 ETESSDLVEKLKTHENQIEEYKKLAHEASGVADTRKVELEDALSKLKNLESTIEELGAKC 439
Query: 442 NLLEKEIGDL---NTQMNYYLS 498
LEKE GDL N ++N L+
Sbjct: 440 QGLEKESGDLAEVNLKLNLELA 461
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 30.7 bits (66), Expect = 2.7
Identities = 22/126 (17%), Positives = 58/126 (46%)
Frame = +1
Query: 106 NETKEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQDFKRTN 285
N+ K+++E + L K E + +++ ++ + + E A+++A + T+
Sbjct: 1448 NKQKQELEKNKKIHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTT----TD 1503
Query: 286 SSLAERVSQTSNTRERAQLLLNRATKLASDTQMQLKLLANMEDLYNDHNDQLNLLEKEIG 465
+ + + V + +R Q+L +L + + + + L ++ + +EKE+G
Sbjct: 1504 AVVEQSVKEREEKEKRIQILDKYVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVG 1563
Query: 466 DLNTQM 483
D T++
Sbjct: 1564 DSLTKI 1569
>At5g24880.1 68418.m02946 expressed protein ; expression supported
by MPSS
Length = 443
Score = 29.9 bits (64), Expect = 4.7
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Frame = +1
Query: 85 NWRSKKAN--ETKEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQ 258
N R KKA+ E D + D Q+ ILK+ESD QV +D + E++ ++
Sbjct: 176 NVRIKKASDKEIALDSASMSSAQEDHQEEILKVESDHLQV----SDHDIEEPKYEKEEKE 231
Query: 259 LRQDFKRTNSSLAERVSQTSNTRERAQLLLNRATKLASDTQMQLKLLANMEDL 417
+++ + N S+ E+ + T + + + +A +++ KL+ N +D+
Sbjct: 232 VQEKVVQANESVEEKAESSGPTPVASPVGKDCNAVVA---ELEEKLIKNEDDI 281
>At3g12190.1 68416.m01520 hypothetical protein
Length = 269
Score = 29.9 bits (64), Expect = 4.7
Identities = 30/130 (23%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Frame = +1
Query: 148 SDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQL------RQDFKRTNSSLAERVS 309
SDL K +IES + +++ ++++ + + E++AR++ R+DF+ L +R+
Sbjct: 49 SDLVKRSQEIESKEKHLEKRSHELESKGKILEKRAREINTADGFRRDFEEKQRKL-DRLK 107
Query: 310 QTSNTRERAQLLLNRATKLASDTQMQLKLLANMEDLYNDHNDQLNLL-EKEIG-DLNTQM 483
+ + E+ + L+ KL + + +LK + ++ +L++ KE+ +L Q
Sbjct: 108 REIESEEKKRFLVQ---KLNRERKFELKRTREQVEALQKNDMKLDVKHSKEMSEELLVQQ 164
Query: 484 NYYLSEITKR 513
Y EI K+
Sbjct: 165 EKY-EEILKK 173
>At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein
contains Pfam profile PF00566: TBC domain
Length = 771
Score = 29.9 bits (64), Expect = 4.7
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Frame = +1
Query: 151 DLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQL-RQDFKRTNSSLAERVSQTSNTR 327
DLQ +L ++ + ++ QE +LRAE E ++ +QD +R + E++ Q
Sbjct: 586 DLQGQVLWLKGELHKLLQEKRSALLRAEELEVALMEMVKQDNRRQLKAKIEQLEQ--GVT 643
Query: 328 ERAQLLLNRATKLASDTQMQLKLLANMEDLYNDHNDQLNLLEKE 459
E +L+ + K ++ M +++L ME + D L E++
Sbjct: 644 ELRRLV---SDKREQESAM-IQVLMRMEQEHKVTEDARRLAEQD 683
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 29.5 bits (63), Expect = 6.2
Identities = 24/148 (16%), Positives = 62/148 (41%)
Frame = +1
Query: 91 RSKKANETKEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQD 270
RS + K++++GL L L + +++ ++++ + ++ E E+ ++
Sbjct: 380 RSSELVSKKKELDGLSLDLELVNSLNNELKETVQRIESKGKEL----EDMERLIQERSGH 435
Query: 271 FKRTNSSLAERVSQTSNTRERAQLLLNRATKLASDTQMQLKLLANMEDLYNDHNDQLNLL 450
+ L E + + ER + KL+ + + K + + + + +L+
Sbjct: 436 NESIKLLLEEHSEELAIKEERHNEIAEAVRKLSLEIVSKEKTIQQLSEKQHSKQTKLDST 495
Query: 451 EKEIGDLNTQMNYYLSEITKRSDNYRSC 534
EK + + ++ +E+ D YR C
Sbjct: 496 EKCLEETTAELVSKENELCSVKDTYREC 523
>At4g18240.1 68417.m02709 starch synthase-related protein contains
similarity to starch synthase GI:4582783 from [Vigna
unguiculata]
Length = 1040
Score = 29.5 bits (63), Expect = 6.2
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Frame = +1
Query: 118 EDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQDFKRTNSSLA 297
+++E L+L L+ +I ++S+ + VK VV+ E++ L K S L+
Sbjct: 280 KELETLKLENLSLRNDIEMLKSELDSVKDTGERVVV----LEKECSGLESSVKDLESKLS 335
Query: 298 ---ERVSQTSNTR----------ERAQLLLNRATKLASDTQMQLK 393
E VSQ S + E QLLL+RATK A + L+
Sbjct: 336 VSQEDVSQLSTLKIECTDLWAKVETLQLLLDRATKQAEQAVIVLQ 380
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 29.5 bits (63), Expect = 6.2
Identities = 17/117 (14%), Positives = 54/117 (46%)
Frame = +1
Query: 109 ETKEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQDFKRTNS 288
+TK+ E + + L +L+ + ++ +++ ND + + + + L+++F + S
Sbjct: 2162 QTKKVSESMEMELFNLRNALGQLNDTVAFTQRKLNDAIDERDNLQDEVLNLKEEFGKMKS 2221
Query: 289 SLAERVSQTSNTRERAQLLLNRATKLASDTQMQLKLLANMEDLYNDHNDQLNLLEKE 459
E ++ ++ A+ A + + ++ + +E N +++N+++ E
Sbjct: 2222 EAKEMEARYIEAQQIAESRKTYADEREEEVKLLEGSVEELEYTINVLENKVNVVKDE 2278
>At3g02710.1 68416.m00262 nuclear associated protein-related /
NAP-related similar to Nuclear associated protein (NAP)
(NYD-SP19) (Swiss-Prot:Q8WYA6) [Homo sapiens]
Length = 529
Score = 29.5 bits (63), Expect = 6.2
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 130 GLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKAR 255
G+R R+ L K ++D +Q+ QE +D + +GAE+K R
Sbjct: 476 GMRARVELLLKQQKLSKTDVKQILQEYHDNIGDLDGAEEKER 517
>At2g30690.1 68415.m03742 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593; expression
supported by MPSS
Length = 788
Score = 29.5 bits (63), Expect = 6.2
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
Frame = +1
Query: 94 SKKANETKEDVEGL-RLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQD 270
S K ET+ G L+ S ++ + I SD E + + + E + R L ++
Sbjct: 603 SLKITETRNTSNGSPELKHSASVESFVSISSDIEG-ESLVEVLKQQLEHGRKSLRDLNKE 661
Query: 271 FK--RTNSSLAERVSQTSNTRERAQLLLNRATKLASDTQMQLKLLANMEDLYNDHNDQLN 444
F+ R S++A + TR + + L M + +M+ L ND L
Sbjct: 662 FEEERNASAIATNQAMAMITRLQEEKAALHMEALQYLRMMDEQAEHDMDALERA-NDVLA 720
Query: 445 LLEKEIGDLNTQMNYY 492
EKEI DL ++ YY
Sbjct: 721 DREKEIQDLEMELEYY 736
>At1g55170.1 68414.m06301 expressed protein
Length = 283
Score = 29.5 bits (63), Expect = 6.2
Identities = 13/66 (19%), Positives = 32/66 (48%)
Frame = +1
Query: 100 KANETKEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQDFKR 279
K + + G+R + DLQK ++ E K+E +++ + + E+ + ++ ++
Sbjct: 159 KLQSDNKQIPGMRAEVKDLQKELMHARDAIEYEKKEKFELMEQRQTMEKNMVSMAREVEK 218
Query: 280 TNSSLA 297
+ LA
Sbjct: 219 LRAELA 224
>At5g07660.1 68418.m00877 structural maintenance of chromosomes (SMC)
family protein similar to SMC-like protein (MIM)
[Arabidopsis thaliana] GI:5880614; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain
Length = 1058
Score = 29.1 bits (62), Expect = 8.2
Identities = 30/136 (22%), Positives = 55/136 (40%)
Frame = +1
Query: 109 ETKEDVEGLRLRLSDLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQDFKRTNS 288
E + ++EGL + L+K ++E D + + E D+ + +E KA N
Sbjct: 664 EAEMNLEGLESTMRRLKKQRTQLEKDLTRKELEMQDLK-NSVASETKASPTSS----VNE 718
Query: 289 SLAERVSQTSNTRERAQLLLNRATKLASDTQMQLKLLANMEDLYNDHNDQLNLLEKEIGD 468
E + E+ LL L +L A+ E+LY ++ LEK +
Sbjct: 719 LHLEIMKFQKEIEEKESLLEKLQDSLKEAELKANELKASYENLYESAKGEIEALEKAEDE 778
Query: 469 LNTQMNYYLSEITKRS 516
L + + S T+++
Sbjct: 779 LKEKEDELHSAETEKN 794
>At1g69545.1 68414.m07997 leucine-rich repeat family protein
contains Pfam PF00560: Leucine Rich Repeat domains;
similar to disease resistance protein RPP1-WsA
(GI:3860163)[Arabidopsis thaliana]
Length = 703
Score = 29.1 bits (62), Expect = 8.2
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +1
Query: 286 SSLAERVSQTSNTRERAQLLLNRATKLASDTQMQLKLLANMEDLYNDHNDQLNLLEKEIG 465
SSL E S N +L L+ + L + + + L N+++LY L L IG
Sbjct: 413 SSLVELPSSIGNLINLKKLDLSGCSSLV-ELPLSIGNLINLQELYLSECSSLVELPSSIG 471
Query: 466 DLNTQMNYYLSE 501
+L YLSE
Sbjct: 472 NLINLQELYLSE 483
>At1g09470.1 68414.m01059 expressed protein ; expression supported
by MPSS
Length = 336
Score = 29.1 bits (62), Expect = 8.2
Identities = 22/137 (16%), Positives = 53/137 (38%)
Frame = +1
Query: 151 DLQKNILKIESDAEQVKQEANDVVLRAEGAEQKARQLRQDFKRTNSSLAERVSQTSNTRE 330
+ + + ++E + ++ +E N+ V + ++ + ++ S LA + +
Sbjct: 58 EAETRVKRMEDEMHELAKELNEKVEQIRASDVATEKFVKELADIKSQLAATHATAEASAL 117
Query: 331 RAQLLLNRATKLASDTQMQLKLLANMEDLYNDHNDQLNLLEKEIGDLNTQMNYYLSEITK 510
A+ + L+ + L ED +QL L KE+ + E+ K
Sbjct: 118 SAESAHSHCRVLSKQLHERTGSLKEHEDQVTRLGEQLENLRKELRVRESSQKQLRDELLK 177
Query: 511 RSDNYRSCTT*IKSKDN 561
+ + +K+K+N
Sbjct: 178 VEGDIMRAVSVVKTKEN 194
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,160,602
Number of Sequences: 28952
Number of extensions: 261747
Number of successful extensions: 627
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4115678784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -