Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_D04_e124_08.seq
(1507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 151 1e-36
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 149 4e-36
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 149 6e-36
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 31 3.1
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 31 3.1
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 30 5.5
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 30 5.5
03_03_0217 + 15500943-15502196 29 7.2
03_06_0519 - 34481751-34482722 29 9.6
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 151 bits (367), Expect = 1e-36
Identities = 84/169 (49%), Positives = 109/169 (64%), Gaps = 15/169 (8%)
Frame = +1
Query: 115 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 294
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 295 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGAVG-RPDAPARTAE 465
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R G G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 466 DRSAY-----RRAPPAGAPHDKKADVGPGSADVE--FRG-----GFGRG 576
DR + R P GAP D + G A+ + FR GFGRG
Sbjct: 120 DRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGRG 168
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 149 bits (362), Expect = 4e-36
Identities = 80/159 (50%), Positives = 104/159 (65%), Gaps = 8/159 (5%)
Frame = +1
Query: 115 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 294
M++PK+NR I +YLF+EGV+ AKKDY+ KHP ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 295 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGAVG-RPDAPARTAE 465
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R G G RP P R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEG 119
Query: 466 DRSAY-----RRAPPAGAPHDKKADVGPGSADVEFRGGF 567
DR + R P GAP D + G A EF+ F
Sbjct: 120 DRPRFGDRDGYRGGPRGAPGDFGGE--KGGAPAEFQPSF 156
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 149 bits (361), Expect = 6e-36
Identities = 81/167 (48%), Positives = 108/167 (64%), Gaps = 13/167 (7%)
Frame = +1
Query: 115 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 294
M++ K+NR I +YLF EGV+ AKKDY+ KHP ++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 295 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--TETVRRGAVG-RPDAPARTAE 465
+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S + + G G RP P R
Sbjct: 60 SWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRPRGPPRFEG 119
Query: 466 DRSAY-----RRAPPAGAPHDKKADVGPGSADVE--FRG---GFGRG 576
DR + R P GAP D + G A+ + FRG GFGRG
Sbjct: 120 DRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRGSRPGFGRG 166
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 30.7 bits (66), Expect = 3.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 452 AGASGLPTAPRRTVSVRTDLFRVAGTISGGKCRKI 348
A A G P P + VR L+ T GG CR +
Sbjct: 3 AAAGGAPPRPAAGIRVRVPLYMTGQTYQGGSCRGV 37
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.7 bits (66), Expect = 3.1
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 145 IYEYLFKEGVMVA-KKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 321
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 322 TNEGIE-YLRIFLHLP 366
N + +L H P
Sbjct: 144 PNGSVSTHLHGSSHAP 159
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 29.9 bits (64), Expect = 5.5
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Frame = +1
Query: 244 IKAMQSLKSRGYVKEQFAWRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTET 414
I + L S G WR F+ YLT E I YL +HL + +T RS+ +
Sbjct: 605 ISSNAQLDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDE 661
Query: 415 VR--RGA---VGRPDAPARTAED 468
R +G+ + +P PA + +D
Sbjct: 662 SRKYKGSLEYISQPSTPAGSNKD 684
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 29.9 bits (64), Expect = 5.5
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = -3
Query: 575 PLPKPPLNSTSAEPGP-----TSAFLSXXXXXXXXXXXADLSSAVRAGASGLPT 429
PLP+PP TSA P P + L+ LS+++ A A LPT
Sbjct: 3 PLPRPPPTPTSAAPAPCPRQIAAVVLNHPSSALTPASTRSLSASLLAVAPSLPT 56
>03_03_0217 + 15500943-15502196
Length = 417
Score = 29.5 bits (63), Expect = 7.2
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Frame = +1
Query: 376 VPATLKRSVRTETVRRGAVGRPDAPARTAEDR--SAYRRAPPAGAPHDK-----KADVGP 534
+P LKR + + R +V APA + R SA R A P + +A GP
Sbjct: 262 LPERLKREIEEAKLLRRSVSAVTAPAAASSGRWASAASRTMSAARPSRRWSALLRALSGP 321
Query: 535 GSADVEFRGGFGRGRSAP 588
+D++ GG GR R AP
Sbjct: 322 RYSDMDGGGGGGR-RVAP 338
>03_06_0519 - 34481751-34482722
Length = 323
Score = 29.1 bits (62), Expect = 9.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 418 RRGAVGRPDAPARTAEDRSAYRRAPP-AGAPHDKKADVGPGSAD 546
R+G G PA ++ + RR+ AGAP D A+ GP S +
Sbjct: 23 RKGKRGAEAPPATSSSTPTTARRSKRLAGAPPDHPAEAGPSSTN 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,405,837
Number of Sequences: 37544
Number of extensions: 545814
Number of successful extensions: 1665
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4826476928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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