BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_D04_e124_08.seq (1507 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 149 4e-36 >AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal protein, small subunitprotein 10 protein. Length = 149 Score = 149 bits (362), Expect = 4e-36 Identities = 81/158 (51%), Positives = 98/158 (62%) Frame = +1 Query: 115 MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 294 M +PK + IYEYLF EGV VAKKD++A HP++E + NL+VIK ++SL SR VKEQF Sbjct: 1 MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60 Query: 295 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 474 AWRH+YWYLT+ GI YLR +L LP EIVPAT+K R V P A DR Sbjct: 61 AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPH-EDRAPRAAQGEKGDRE 119 Query: 475 AYRRAPPAGAPHDKKADVGPGSADVEFRGGFGRGRSAP 588 AYR +K + GPG A V +R GFGRG P Sbjct: 120 AYRT--------EKVTEAGPGGAPV-YRAGFGRGAPPP 148 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,323,080 Number of Sequences: 27780 Number of extensions: 428113 Number of successful extensions: 1240 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 1152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1237 length of database: 12,740,198 effective HSP length: 84 effective length of database: 10,406,678 effective search space used: 4339584726 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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