Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D04_e124_08.seq
         (1507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    24   3.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   3.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   6.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   6.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   6.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   6.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   6.8  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 666 SESYYNFTGRRFYNVVDWXNPGVPNLIALAAHPPFRPAG 782
           + +Y N+  + +YN+++     VP  +     PP RP G
Sbjct: 326 NNNYKNYNKKLYYNIINIEQIPVPVPVYCGNFPP-RPMG 363


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 222 LEIWMFGCMV-VFLSYHDSLLEEVL 151
           L++WM GCM+ VF +  + ++ +VL
Sbjct: 262 LDVWMAGCMMFVFAALGEFVVVKVL 286


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 117 VDAKTKPCFYL*VPLQG 167
           +DA TKPC +   P QG
Sbjct: 294 IDANTKPCTWAARPWQG 310


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 117 VDAKTKPCFYL*VPLQG 167
           +DA TKPC +   P QG
Sbjct: 294 IDANTKPCTWAARPWQG 310


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 117 VDAKTKPCFYL*VPLQG 167
           +DA TKPC +   P QG
Sbjct: 294 IDANTKPCTWAARPWQG 310


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 386 VAGTISGGKCRKILRYSIPSFVK 318
           V G  S G C  +LR  +PSFVK
Sbjct: 138 VIGGASRG-CTAVLRCVVPSFVK 159


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 386 VAGTISGGKCRKILRYSIPSFVK 318
           V G  S G C  +LR  +PSFVK
Sbjct: 138 VIGGASRG-CTAVLRCVVPSFVK 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,399
Number of Sequences: 438
Number of extensions: 5358
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52635000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)