Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_D03_e116_07.seq
(1484 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62847 Cluster: 40S ribosomal protein S24; n=212; Eukar... 214 6e-54
UniRef50_Q8LC83 Cluster: 40S ribosomal protein S24-2; n=6; Eukar... 167 5e-40
UniRef50_A3BCP7 Cluster: Putative uncharacterized protein; n=2; ... 131 4e-34
UniRef50_Q8MUB8 Cluster: 40S ribosomal protein S24; n=1; Clonorc... 141 5e-32
UniRef50_Q8I3R6 Cluster: 40S ribosomal subunit protein S24, puta... 134 6e-30
UniRef50_Q5CPN5 Cluster: 40s ribosomal protein s24; n=6; Eukaryo... 128 5e-28
UniRef50_Q00V00 Cluster: 40S ribosomal protein S24; n=1; Ostreoc... 123 1e-26
UniRef50_UPI0000498B4B Cluster: 40S ribosomal protein S24; n=3; ... 117 9e-25
UniRef50_UPI000150A155 Cluster: Ribosomal protein S24e containin... 113 8e-24
UniRef50_Q4Q1D2 Cluster: 40S ribosomal protein S24e; n=4; Leishm... 111 5e-23
UniRef50_A2F0H5 Cluster: 40S ribosomal protein S24; n=3; Trichom... 111 5e-23
UniRef50_A0BWM9 Cluster: Chromosome undetermined scaffold_132, w... 106 2e-21
UniRef50_Q91834 Cluster: Fragment of Xenopus laevis ribosomal pr... 101 4e-20
UniRef50_Q9AW51 Cluster: 40S ribosomal protein S24; n=1; Guillar... 96 2e-18
UniRef50_Q8SR06 Cluster: 40S RIBOSOMAL PROTEIN S24; n=1; Encepha... 75 6e-12
UniRef50_Q9UY20 Cluster: 30S ribosomal protein S24e; n=4; Thermo... 68 7e-10
UniRef50_Q8ZV65 Cluster: 30S ribosomal protein S24e; n=4; Pyroba... 61 6e-08
UniRef50_A3DMS7 Cluster: 30S ribosomal protein S24e; n=1; Staphy... 61 8e-08
UniRef50_A1RXC7 Cluster: 30S ribosomal protein S24e; n=1; Thermo... 58 8e-07
UniRef50_A4YIV8 Cluster: Ribosomal protein S24E-like protein; n=... 55 5e-06
UniRef50_Q8TVD8 Cluster: 30S ribosomal protein S24e; n=1; Methan... 54 1e-05
UniRef50_O29151 Cluster: 30S ribosomal protein S24e; n=1; Archae... 53 2e-05
UniRef50_Q9YCY0 Cluster: 30S ribosomal protein S24e; n=2; Desulf... 52 3e-05
UniRef50_Q74M50 Cluster: 30S ribosomal protein S24e; n=1; Nanoar... 50 1e-04
UniRef50_O26367 Cluster: 30S ribosomal protein S24e; n=3; Methan... 50 2e-04
UniRef50_A3H8R4 Cluster: 30S ribosomal protein S24e; n=1; Caldiv... 48 5e-04
UniRef50_Q975Q9 Cluster: 30S ribosomal protein S24e; n=3; Sulfol... 47 0.001
UniRef50_Q8PZ95 Cluster: 30S ribosomal protein S24e; n=5; Euryar... 46 0.002
UniRef50_Q6L0P8 Cluster: 30S ribosomal protein S24e; n=4; Thermo... 45 0.006
UniRef50_P19953 Cluster: 30S ribosomal protein S24e; n=6; Haloba... 44 0.014
UniRef50_P34582 Cluster: Uncharacterized protein T26G10.3; n=1; ... 42 0.031
UniRef50_A7I4V3 Cluster: SSU ribosomal protein S24E; n=1; Candid... 40 0.13
UniRef50_P54032 Cluster: 30S ribosomal protein S24e; n=1; Methan... 40 0.13
UniRef50_Q2FS46 Cluster: 30S ribosomal protein S24e; n=1; Methan... 38 0.51
UniRef50_A2SR72 Cluster: Ribosomal protein S24e; n=2; Methanomic... 38 0.51
UniRef50_Q1XFY8 Cluster: Putative uncharacterized protein; n=1; ... 37 1.2
>UniRef50_P62847 Cluster: 40S ribosomal protein S24; n=212;
Eukaryota|Rep: 40S ribosomal protein S24 - Homo sapiens
(Human)
Length = 133
Score = 214 bits (522), Expect = 6e-54
Identities = 100/124 (80%), Positives = 109/124 (87%)
Frame = +1
Query: 61 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 240
T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 241 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTKKS 420
FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +R QR ERKNRM KVRGT K+
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123
Query: 421 KVGA 432
VGA
Sbjct: 124 NVGA 127
>UniRef50_Q8LC83 Cluster: 40S ribosomal protein S24-2; n=6;
Eukaryota|Rep: 40S ribosomal protein S24-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 133
Score = 167 bits (407), Expect = 5e-40
Identities = 80/128 (62%), Positives = 99/128 (77%), Gaps = 1/128 (0%)
Frame = +1
Query: 49 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 225
M+E TIRTR FMTNRLLARKQ V DVLHPG+ VSK E++EKLA+MY+V P+ +F F
Sbjct: 1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60
Query: 226 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVR 405
F+T+FGGGKS+G+ LIYDT++ AKKFEPK+RL R+GL K +R Q ERKNR K+R
Sbjct: 61 KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120
Query: 406 GTKKSKVG 429
G KK+K G
Sbjct: 121 GVKKTKAG 128
>UniRef50_A3BCP7 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 166
Score = 131 bits (316), Expect(2) = 4e-34
Identities = 60/89 (67%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Frame = +1
Query: 67 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 243
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 244 GGGKSTGFALIYDTLDLAKKFEPKHRLAR 330
GGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 38.3 bits (85), Expect(2) = 4e-34
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +1
Query: 331 HGLYEKKRPTRXQRXERKNRMXKVRGTKKSKVGAA 435
+GL K +R Q ERKNR K+RG KK+K G A
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDA 162
>UniRef50_Q8MUB8 Cluster: 40S ribosomal protein S24; n=1; Clonorchis
sinensis|Rep: 40S ribosomal protein S24 - Clonorchis
sinensis
Length = 139
Score = 141 bits (341), Expect = 5e-32
Identities = 65/107 (60%), Positives = 83/107 (77%)
Frame = +1
Query: 70 IRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGG 249
IRTRKFM+NRLL R+QMV D+LHPG+ +S +IRE+LAK YK +PD+VF FGF+T+FGG
Sbjct: 7 IRTRKFMSNRLLFRRQMVVDILHPGRCVLSLKDIRERLAKTYKTSPDMVFAFGFRTHFGG 66
Query: 250 GKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNR 390
GKSTGFAL+YD+LD AKKFEP++RL R + P R + ER +
Sbjct: 67 GKSTGFALVYDSLDHAKKFEPRYRLIRVKWVAGRHPQRQKVEERTQK 113
>UniRef50_Q8I3R6 Cluster: 40S ribosomal subunit protein S24,
putative; n=1; Plasmodium falciparum 3D7|Rep: 40S
ribosomal subunit protein S24, putative - Plasmodium
falciparum (isolate 3D7)
Length = 133
Score = 134 bits (324), Expect = 6e-30
Identities = 65/128 (50%), Positives = 90/128 (70%), Gaps = 2/128 (1%)
Frame = +1
Query: 67 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 243
TIR +K+M+N LL RKQ ++LHP K +V+K E++E+LAKMYK+ + + +FGFKT F
Sbjct: 6 TIRVKKYMSNPLLRRKQFALEILHPNKGSVAKKEVKERLAKMYKLNNVNTIVLFGFKTLF 65
Query: 244 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKK-RPTRXQRXERKNRMXKVRGTKKS 420
GGG++ GF LIY +D KKFE K+RL R GL +K+ + R E KNR KVRGT+K+
Sbjct: 66 GGGRTKGFGLIYKNVDAVKKFEKKYRLVREGLIDKETKAGRRASKELKNRRKKVRGTEKT 125
Query: 421 KVGAAPQE 444
KV A ++
Sbjct: 126 KVSGAKKK 133
>UniRef50_Q5CPN5 Cluster: 40s ribosomal protein s24; n=6;
Eukaryota|Rep: 40s ribosomal protein s24 -
Cryptosporidium parvum Iowa II
Length = 159
Score = 128 bits (308), Expect = 5e-28
Identities = 63/122 (51%), Positives = 86/122 (70%), Gaps = 2/122 (1%)
Frame = +1
Query: 67 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 243
T+R R+F+ N LLARKQ V DV+HP VSK++++ KLAK+YKV + + +FGFKT F
Sbjct: 33 TVRVRQFLNNPLLARKQFVVDVIHPSLGGVSKSDLKAKLAKLYKVQDANCIVLFGFKTAF 92
Query: 244 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPT-RXQRXERKNRMXKVRGTKKS 420
GGG+S+GF +IY+ + KKFE ++R R G+ EK T R R E KNR KVRGT+K+
Sbjct: 93 GGGRSSGFCVIYNNISALKKFEHRYRQVRMGIAEKVTATGRKGRKETKNRRKKVRGTEKA 152
Query: 421 KV 426
K+
Sbjct: 153 KI 154
>UniRef50_Q00V00 Cluster: 40S ribosomal protein S24; n=1;
Ostreococcus tauri|Rep: 40S ribosomal protein S24 -
Ostreococcus tauri
Length = 134
Score = 123 bits (297), Expect = 1e-26
Identities = 69/133 (51%), Positives = 86/133 (64%), Gaps = 20/133 (15%)
Frame = +1
Query: 88 MTNRLLARKQMV-----------CDVLHPGKPTVSK--------TEIREKLAKMYKVTPD 210
MTNRLL R+Q V CDVLHPG+ VSK E++EK+AKMY V+ +
Sbjct: 1 MTNRLLQRRQFVRLTNVFHQSQICDVLHPGRANVSKVRYIRGAGAELQEKIAKMYNVSDE 60
Query: 211 -VVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKN 387
V +FGF+T FGGGKSTGF LIYD +D KKFEPKHRL R GL + + +R E+KN
Sbjct: 61 KCVSIFGFRTAFGGGKSTGFGLIYDNIDAFKKFEPKHRLIRAGLKDAVQKSRKNIKEKKN 120
Query: 388 RMXKVRGTKKSKV 426
R+ K+RG K+KV
Sbjct: 121 RVKKLRGGAKNKV 133
>UniRef50_UPI0000498B4B Cluster: 40S ribosomal protein S24; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S24 - Entamoeba histolytica HM-1:IMSS
Length = 140
Score = 117 bits (281), Expect = 9e-25
Identities = 61/120 (50%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Frame = +1
Query: 67 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 243
TIRTR + N LL RKQ+V D+ HPG TEI+EKLAKMYKV + + GF T +
Sbjct: 9 TIRTRNLIVNPLLCRKQVVVDIYHPGIVQPKFTEIKEKLAKMYKVKDVQTIVLNGFVTKY 68
Query: 244 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTKKSK 423
GGGK++GFALIYDTL KKF PKH+L R GL +K + R R E K + K K
Sbjct: 69 GGGKTSGFALIYDTLSALKKFVPKHQLIRAGLDKKTKAPRKARKEHKKKWRMCHSFKDYK 128
>UniRef50_UPI000150A155 Cluster: Ribosomal protein S24e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal protein S24e containing protein - Tetrahymena
thermophila SB210
Length = 149
Score = 113 bits (273), Expect = 8e-24
Identities = 56/122 (45%), Positives = 76/122 (62%)
Frame = +1
Query: 61 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 240
T IRT+K + N LL+R+Q+ DVLHP PT SK +IRE+LAK KV V V+GF T
Sbjct: 2 TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKVDARNVVVYGFSTQ 61
Query: 241 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTKKS 420
+GGGKSTGFAL+YD K+EP +RL + + +K TR E K ++ + G +
Sbjct: 62 YGGGKSTGFALVYDNQQYLLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAIT 121
Query: 421 KV 426
K+
Sbjct: 122 KL 123
>UniRef50_Q4Q1D2 Cluster: 40S ribosomal protein S24e; n=4;
Leishmania|Rep: 40S ribosomal protein S24e - Leishmania
major
Length = 137
Score = 111 bits (267), Expect = 5e-23
Identities = 62/121 (51%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
Frame = +1
Query: 70 IRTRKFMTNRLLARKQMVCDVLHPGK-PTVSKTEIREKLAKMYKVTPDV--VFVFGFKTN 240
IRT +F N+LL RKQ + +V HP TV IR+KLA +YKV PD V +FGFKT
Sbjct: 12 IRTSQFKVNKLLNRKQFIVEVNHPHWCGTVPTQLIRKKLATLYKV-PDASQVSLFGFKTK 70
Query: 241 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTKKS 420
FGGGK+TGF LIYD L K+FEP +R R G + + P R ER+NR K+RG K
Sbjct: 71 FGGGKTTGFGLIYDDLASLKRFEPNYRKTRMGFGKARLPARKSVKERRNRNKKLRGKAKG 130
Query: 421 K 423
K
Sbjct: 131 K 131
>UniRef50_A2F0H5 Cluster: 40S ribosomal protein S24; n=3;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein S24
- Trichomonas vaginalis G3
Length = 140
Score = 111 bits (267), Expect = 5e-23
Identities = 51/117 (43%), Positives = 74/117 (63%)
Frame = +1
Query: 67 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 246
++ RK++ N+LL RKQ V D+ H G ++ EI++++A K D+V +FG +T FG
Sbjct: 5 SVHIRKYIVNKLLDRKQFVIDMQHLGAKAPTRDEIKDEVASRLKANKDLVVIFGLETKFG 64
Query: 247 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTKK 417
GG +TGF +YD+LD KK EPKHRL + GL EK + TR R + + KV G+ K
Sbjct: 65 GGHTTGFGFVYDSLDALKKTEPKHRLIKAGLAEKGKVTRRMRKNARRQKVKVWGSGK 121
>UniRef50_A0BWM9 Cluster: Chromosome undetermined scaffold_132,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_132,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 182
Score = 106 bits (254), Expect = 2e-21
Identities = 52/123 (42%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Frame = +1
Query: 61 TATIRTRKFMTNRLLA-RKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKT 237
T ++TRK + + L R+Q+ ++LHP KPT S+ + ++LA YK V V+G +T
Sbjct: 34 TFIVKTRKVLLKQSLEIRRQLSVELLHPNKPTPSQESVVKELASKYKADERNVVVYGLRT 93
Query: 238 NFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTKK 417
FGG ++TGFALIYDT KFEPK RL R G+ K+ +R E K+++ K RG +K
Sbjct: 94 TFGGNRTTGFALIYDTQQYLLKFEPKFRLRRRGIIPKRDGSRKGWKEVKSKLKKTRGAEK 153
Query: 418 SKV 426
+K+
Sbjct: 154 TKI 156
>UniRef50_Q91834 Cluster: Fragment of Xenopus laevis ribosomal
protein S19; n=1; Xenopus laevis|Rep: Fragment of
Xenopus laevis ribosomal protein S19 - Xenopus laevis
(African clawed frog)
Length = 142
Score = 101 bits (243), Expect = 4e-20
Identities = 54/123 (43%), Positives = 75/123 (60%)
Frame = -3
Query: 429 TYFRFLGTSYLXHSVLTFXTLXACRPLLFIQAVTSESVFWLKLLC*V*RVVD*SKSGRFA 250
T+ F T Y HSVL F TL + L I+ + +SVF L L C V RVVD +K+ FA
Sbjct: 10 THICFGCTPYFLHSVLAFFTLLSGSLFLLIKPMLGKSVFRLILFCIVKRVVDHAKACSFA 69
Query: 249 TTEVRLETEHENYVWRHFVHFSELFTDLSFADGRFSWMQDIAYHLLARQQSVGHKFTRTN 70
T++V +T+H+N +W VH +LF+D S D F+WM+ I HLLA Q+SV HK + ++
Sbjct: 70 TSKVSPKTKHKNNIWGCLVHLCQLFSDFSLGDSSFAWMKYINDHLLALQKSVCHKLSCSD 129
Query: 69 RRC 61
C
Sbjct: 130 SHC 132
>UniRef50_Q9AW51 Cluster: 40S ribosomal protein S24; n=1; Guillardia
theta|Rep: 40S ribosomal protein S24 - Guillardia theta
(Cryptomonas phi)
Length = 129
Score = 95.9 bits (228), Expect = 2e-18
Identities = 47/116 (40%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Frame = +1
Query: 70 IRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVFGFKTNFG 246
++T+KF N LL RKQ + + K +SK +R +L+K Y++ P ++F+FG K NFG
Sbjct: 10 LKTKKFKNNPLLKRKQFLLSIDRKKKFNISKEWLRIELSKYYRIKDPSLIFIFGLKNNFG 69
Query: 247 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTK 414
G K + F IY L+ A+ EPKHRL ++ L + + + QR E+KN+M K G K
Sbjct: 70 GFKCSAFVYIYYNLEAARVNEPKHRLIKNNLMKLELQSSKQRKEKKNKMKKYFGNK 125
>UniRef50_Q8SR06 Cluster: 40S RIBOSOMAL PROTEIN S24; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S24
- Encephalitozoon cuniculi
Length = 126
Score = 74.5 bits (175), Expect = 6e-12
Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Frame = +1
Query: 94 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 273
NRLL+RK++ HPG P SK EIREK++++Y+ D V V K +G ++T A
Sbjct: 8 NRLLSRKELDVVAYHPGMPIPSKEEIREKISELYQTKKDNVVVMDLKNRYGTHRTTLKAK 67
Query: 274 IYDTLDLAKKFEPKHRLAR-HGLYEKKRPTRXQRXERKNRMXKVRGTKKSKVGAAPQE 444
IY ++++ E KH +A+ G P R ++ ERK R K+ GT K + A ++
Sbjct: 68 IYSSIEVLSNIEKKHIVAKLTGKEFHVTPRRVRKDERKKR-YKIFGTLKRAMKKAERK 124
>UniRef50_Q9UY20 Cluster: 30S ribosomal protein S24e; n=4;
Thermococcaceae|Rep: 30S ribosomal protein S24e -
Pyrococcus abyssi
Length = 99
Score = 67.7 bits (158), Expect = 7e-10
Identities = 31/94 (32%), Positives = 53/94 (56%)
Frame = +1
Query: 70 IRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGG 249
I+ + N+L+ RK++ ++ HPG+PT S+ +++ KL M + P+ + ++ FG
Sbjct: 3 IKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGS 62
Query: 250 GKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKK 351
KS G+A Y D EP++ L R G+ EKK
Sbjct: 63 YKSKGYAKYYYDKDRMLYIEPEYILIRDGIIEKK 96
>UniRef50_Q8ZV65 Cluster: 30S ribosomal protein S24e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S24e -
Pyrobaculum aerophilum
Length = 121
Score = 61.3 bits (142), Expect = 6e-08
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Frame = +1
Query: 94 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 273
N+LLAR++++ + +H T ++ +RE +AK + VFV KT FG G+S
Sbjct: 14 NKLLARRELLVEAVHQNASTPTRQSVREWVAKQLGIDISNVFVRRIKTEFGRGRSLAEVH 73
Query: 274 IYDTLDLAKKFEPKHRLARH------GLYEKKRPTRXQRXERKNRMXK 399
+Y+ +A+ EP + LAR+ L E+ + R +R E+K R K
Sbjct: 74 VYNDSKIARVIEPLYILARNLGEEGKKLLEEAKKRRNERREKKKRKKK 121
>UniRef50_A3DMS7 Cluster: 30S ribosomal protein S24e; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S24e - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 118
Score = 60.9 bits (141), Expect = 8e-08
Identities = 35/96 (36%), Positives = 55/96 (57%)
Frame = +1
Query: 46 KMSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVF 225
K+ E T I K+ N L+ R+++V + H GK T S+ IR + AK+Y V + V+V
Sbjct: 6 KIGEFTGEIVVDKY--NPLVKRREVVIRIAHIGKSTPSRGLIRHETAKIYGVEVEKVYVR 63
Query: 226 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARH 333
T +G G S IYD+++ AK+FEP + + R+
Sbjct: 64 EINTEYGLGVSNATIHIYDSVERAKQFEPPYVIKRN 99
>UniRef50_A1RXC7 Cluster: 30S ribosomal protein S24e; n=1;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein
S24e - Thermofilum pendens (strain Hrk 5)
Length = 106
Score = 57.6 bits (133), Expect = 8e-07
Identities = 29/102 (28%), Positives = 53/102 (51%)
Frame = +1
Query: 64 ATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNF 243
+++R + N+L+ R++++ ++ H G T S+ ++ E L M + V T +
Sbjct: 4 SSLRIIQEKVNKLVGRRELLVEIHHQGSGTPSRRDVAEALRNMLGTGGSAIVVRKLVTRY 63
Query: 244 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQ 369
G G S IYD+ K FEPKH L R+GL +++ + +
Sbjct: 64 GQGVSEALIHIYDSDVKMKMFEPKHILRRNGLIQEQEAKKQE 105
>UniRef50_A4YIV8 Cluster: Ribosomal protein S24E-like protein; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S24E-like protein - Metallosphaera sedula DSM 5348
Length = 113
Score = 54.8 bits (126), Expect = 5e-06
Identities = 25/79 (31%), Positives = 41/79 (51%)
Frame = +1
Query: 94 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 273
N+++ RK++ V H G PT S+ +IR+ ++ D+V + T +G G S
Sbjct: 23 NKVIGRKEIKIKVYHIGSPTPSRADIRKAISSFIGAKEDLVVIRKINTGYGAGISEATIH 82
Query: 274 IYDTLDLAKKFEPKHRLAR 330
+Y D+ KFEP H + R
Sbjct: 83 VYSEKDVLSKFEPAHLVNR 101
>UniRef50_Q8TVD8 Cluster: 30S ribosomal protein S24e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S24e -
Methanopyrus kandleri
Length = 116
Score = 54.0 bits (124), Expect = 1e-05
Identities = 27/80 (33%), Positives = 45/80 (56%)
Frame = +1
Query: 94 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 273
N LL RK++ V H T K+E+ KLA + V +VV + ++ FG ++ G+A
Sbjct: 11 NPLLYRKEVKFVVRHEDSGTPQKSEVLRKLAAILDVDKEVVLIDRMESEFGKRETKGYAK 70
Query: 274 IYDTLDLAKKFEPKHRLARH 333
IY +++ + EP+H + RH
Sbjct: 71 IYKSMEHLEDIEPEHMVERH 90
>UniRef50_O29151 Cluster: 30S ribosomal protein S24e; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S24e -
Archaeoglobus fulgidus
Length = 110
Score = 53.2 bits (122), Expect = 2e-05
Identities = 29/85 (34%), Positives = 49/85 (57%)
Frame = +1
Query: 94 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 273
N LL R+++ C + GK T S+ E+R K+A + P+ V V KT FG ++ +
Sbjct: 14 NPLLRRREVYCRLSFEGK-TPSRKEVRGKIAGLMNAEPERVVVDYIKTEFGKTEAKCYVK 72
Query: 274 IYDTLDLAKKFEPKHRLARHGLYEK 348
IYDT++ +K E +H + R+ + E+
Sbjct: 73 IYDTVEDLQKIEEEHIIERNKVEEQ 97
>UniRef50_Q9YCY0 Cluster: 30S ribosomal protein S24e; n=2;
Desulfurococcales|Rep: 30S ribosomal protein S24e -
Aeropyrum pernix
Length = 118
Score = 52.4 bits (120), Expect = 3e-05
Identities = 27/81 (33%), Positives = 47/81 (58%)
Frame = +1
Query: 94 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 273
N L+ R+++V + H KPT + +R+KLA++ V +++ KT +G G S
Sbjct: 28 NPLVKRREIVMILHHELKPTPMRIMLRQKLAEVLGVDIKRIYIRYIKTGYGAGLSKVRVH 87
Query: 274 IYDTLDLAKKFEPKHRLARHG 336
+YD+ + A FEPK+ + R+G
Sbjct: 88 VYDSPERALSFEPKYIIERNG 108
>UniRef50_Q74M50 Cluster: 30S ribosomal protein S24e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S24e -
Nanoarchaeum equitans
Length = 94
Score = 50.4 bits (115), Expect = 1e-04
Identities = 26/82 (31%), Positives = 45/82 (54%)
Frame = +1
Query: 94 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 273
N+L R + + V HP + T ++ E +EK+A+M V + + + + +G S +A
Sbjct: 12 NKLFDRTEYIIQVEHPKEKTPTREEAKEKIAEMLNVDKNKLVIKKIVSKYGLPYSFIYAR 71
Query: 274 IYDTLDLAKKFEPKHRLARHGL 339
+YD +D AK+ E K L R+ L
Sbjct: 72 VYDNIDTAKRVELKQILRRNNL 93
>UniRef50_O26367 Cluster: 30S ribosomal protein S24e; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S24e -
Methanobacterium thermoautotrophicum
Length = 100
Score = 50.0 bits (114), Expect = 2e-04
Identities = 24/80 (30%), Positives = 44/80 (55%)
Frame = +1
Query: 94 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 273
N LL RK++ + L+ G+ T E++ KL M D++ V FG ++TG+A
Sbjct: 11 NPLLNRKEIRFECLYEGESTPKVLEVKNKLVAMLDADKDLLVVDKIDQGFGEPRATGYAK 70
Query: 274 IYDTLDLAKKFEPKHRLARH 333
IY++ + + EP+H + ++
Sbjct: 71 IYESAEKLTEIEPEHVIKKN 90
>UniRef50_A3H8R4 Cluster: 30S ribosomal protein S24e; n=1;
Caldivirga maquilingensis IC-167|Rep: 30S ribosomal
protein S24e - Caldivirga maquilingensis IC-167
Length = 155
Score = 48.4 bits (110), Expect = 5e-04
Identities = 30/114 (26%), Positives = 53/114 (46%)
Frame = +1
Query: 58 GTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKT 237
G ++ + N LL RK++ V H G PT + ++RE+LAK P++ +V T
Sbjct: 36 GKVQVKVIEQFNNPLLQRKEVKAIVYHVGLPTPQRLQLREELAKALGSNPELTYVTHVYT 95
Query: 238 NFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXK 399
+G G S +Y + A+ EP + R+ ++ + R + R+ K
Sbjct: 96 QYGVGVSRIEVHVYFDKNTAELVEPLYVRLRNMPKDQAKKIRDELKSRRKSEKK 149
>UniRef50_Q975Q9 Cluster: 30S ribosomal protein S24e; n=3;
Sulfolobus|Rep: 30S ribosomal protein S24e - Sulfolobus
tokodaii
Length = 120
Score = 46.8 bits (106), Expect = 0.001
Identities = 27/95 (28%), Positives = 49/95 (51%)
Frame = +1
Query: 46 KMSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVF 225
K+SE I R + N ++ R+++ V H G T+S+ ++ + +A Y D+V +
Sbjct: 10 KISEKAEGIVERD-IKNNVIGRRELYIKVFHIGSGTISRKDMIKAIASSYGAQEDLVVIK 68
Query: 226 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLAR 330
T +G G S A IY+ ++FEP++ + R
Sbjct: 69 KIHTLYGAGISYVRANIYNDKKTLQEFEPQYLIGR 103
>UniRef50_Q8PZ95 Cluster: 30S ribosomal protein S24e; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S24e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 101
Score = 46.4 bits (105), Expect = 0.002
Identities = 27/90 (30%), Positives = 49/90 (54%)
Frame = +1
Query: 70 IRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGG 249
I+ K N LL R+++ V + G T S+ ++R KLA M +++ + KT +G
Sbjct: 3 IKIIKDKKNPLLNRRELDFIVKYEGS-TPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGM 61
Query: 250 GKSTGFALIYDTLDLAKKFEPKHRLARHGL 339
+S G+A +Y+ D K+ E ++ L R+ +
Sbjct: 62 QESKGYAKLYEDADRMKQVEQEYVLKRNAV 91
>UniRef50_Q6L0P8 Cluster: 30S ribosomal protein S24e; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S24e -
Picrophilus torridus
Length = 102
Score = 44.8 bits (101), Expect = 0.006
Identities = 27/86 (31%), Positives = 44/86 (51%)
Frame = +1
Query: 94 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 273
N+LL RK++ + T S+ +IR+ LA Y ++ V + G + G+A
Sbjct: 14 NKLLFRKEINYTIKFENDKTPSREDIRKLLANNYGSDESLIIVDKNRQETGKHEIKGYAK 73
Query: 274 IYDTLDLAKKFEPKHRLARHGLYEKK 351
IYDT + A +EP + L R+ L K+
Sbjct: 74 IYDTKEHAMLYEPDYELFRNKLKVKE 99
>UniRef50_P19953 Cluster: 30S ribosomal protein S24e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S24e -
Haloarcula marismortui (Halobacterium marismortui)
Length = 102
Score = 43.6 bits (98), Expect = 0.014
Identities = 24/80 (30%), Positives = 40/80 (50%)
Frame = +1
Query: 94 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 273
N +L R + +V+H + T S+ +R+ LA + V + T FG K+ G+A
Sbjct: 11 NPMLHRTDVRFEVVHD-EATPSRLSVRDSLAATLNKDAEEVVIHKLDTKFGMRKTVGYAK 69
Query: 274 IYDTLDLAKKFEPKHRLARH 333
+YD + A+ E H L R+
Sbjct: 70 VYDNPEYARDVEQDHMLERN 89
>UniRef50_P34582 Cluster: Uncharacterized protein T26G10.3; n=1;
Caenorhabditis elegans|Rep: Uncharacterized protein
T26G10.3 - Caenorhabditis elegans
Length = 91
Score = 42.3 bits (95), Expect = 0.031
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 118 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 216
MV +V+ PG+PT K +IREK+A Y + PD +
Sbjct: 1 MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33
>UniRef50_A7I4V3 Cluster: SSU ribosomal protein S24E; n=1;
Candidatus Methanoregula boonei 6A8|Rep: SSU ribosomal
protein S24E - Methanoregula boonei (strain 6A8)
Length = 99
Score = 40.3 bits (90), Expect = 0.13
Identities = 26/79 (32%), Positives = 40/79 (50%)
Frame = +1
Query: 94 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 273
N LL+R+++ + + G T S+ +I KL + +V + K+NFG G A
Sbjct: 11 NELLSRREIAFTLTYDGA-TPSRLQIIGKLCALLNTKDPLVVLDSLKSNFGKMVIVGKAR 69
Query: 274 IYDTLDLAKKFEPKHRLAR 330
IYD+ D KK E + AR
Sbjct: 70 IYDSEDAKKKTEHPYLSAR 88
>UniRef50_P54032 Cluster: 30S ribosomal protein S24e; n=1;
Methanocaldococcus jannaschii|Rep: 30S ribosomal protein
S24e - Methanococcus jannaschii
Length = 101
Score = 40.3 bits (90), Expect = 0.13
Identities = 25/85 (29%), Positives = 44/85 (51%)
Frame = +1
Query: 94 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 273
N LL RK+ V H G PT + +++ KLA + D++ V G ++ G+A
Sbjct: 11 NPLLKRKEYRFIVDHDG-PTPTFKDVKLKLAAILNANKDLLIVEKIVEEAGMQRARGYAK 69
Query: 274 IYDTLDLAKKFEPKHRLARHGLYEK 348
+YD ++ K E +H L ++ + E+
Sbjct: 70 LYDNEEMLKLVEREHILRKNKIEEE 94
>UniRef50_Q2FS46 Cluster: 30S ribosomal protein S24e; n=1;
Methanospirillum hungatei JF-1|Rep: 30S ribosomal
protein S24e - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 112
Score = 38.3 bits (85), Expect = 0.51
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = +1
Query: 94 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 273
N LL RK++ + G T S+ + KLA M D + + FG + TG A
Sbjct: 11 NVLLNRKEIGFSITFTGA-TPSRKMVHAKLAAMLSAPKDQLVIGSLHNRFGLTEITGDAR 69
Query: 274 IYDTLDLAKKFEPKH 318
+Y + + KK EP++
Sbjct: 70 VYTSAEYLKKIEPEY 84
>UniRef50_A2SR72 Cluster: Ribosomal protein S24e; n=2;
Methanomicrobiales|Rep: Ribosomal protein S24e -
Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z)
Length = 97
Score = 38.3 bits (85), Expect = 0.51
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +1
Query: 94 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 273
N LL+R ++ + G T ++++I K+A M + + + K FG TG A
Sbjct: 11 NELLSRNELAFTASYDGA-TPARSDIGAKIAAMQNTPVENLILSPLKGRFGTRAVTGVAR 69
Query: 274 IYDTLDLAKKFEPKHRLAR 330
IYDT + K E + +AR
Sbjct: 70 IYDTPEALKATEREFLIAR 88
>UniRef50_Q1XFY8 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 204
Score = 37.1 bits (82), Expect = 1.2
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 262 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNR 390
GF L+YDT D A K++P+H + H R + +R E++ R
Sbjct: 54 GFTLVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,350,155
Number of Sequences: 1657284
Number of extensions: 10227358
Number of successful extensions: 21792
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 21274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21767
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 157278995250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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