Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D03_e116_07.seq
         (1484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...   151   2e-37
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...   145   1e-35
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   5.0  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   5.0  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   6.6  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    27   8.8  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score =  151 bits (366), Expect = 2e-37
 Identities = 78/124 (62%), Positives = 91/124 (73%), Gaps = 1/124 (0%)
 Frame = +1

Query: 49  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 228
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK EIREKLA+MYK   + V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59

Query: 229 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRXQRXERKNRMXKVR 405
            +T+FGGG+STGFALIYD+ +  KKFEP +RL R G  E  ++  R QR +RKNR  KV 
Sbjct: 60  LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVF 119

Query: 406 GTKK 417
           GT K
Sbjct: 120 GTGK 123


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score =  145 bits (352), Expect = 1e-35
 Identities = 73/124 (58%), Positives = 89/124 (71%), Gaps = 1/124 (0%)
 Frame = +1

Query: 49  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 228
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK ++REKL +MYK     V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59

Query: 229 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRXQRXERKNRMXKVR 405
            +T++GGG++TGFALIYD ++  KKFEP +RL R G  E  ++  R QR +RKNR  KV 
Sbjct: 60  LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVF 119

Query: 406 GTKK 417
           GT K
Sbjct: 120 GTGK 123


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 166 EIREKLAKMYKVTPDVVFVFGFKTNFGG 249
           +++E LAK YK+ P  +F   F T+  G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 237 RLETEHENY-VWRHFVHFSELFTDLSFADGRFSWMQDIAYHL 115
           RLE EH    V R+      L    +F D R+ W Q+I+  L
Sbjct: 261 RLEVEHPGEEVLRNNRILGRLMPSRAFGDARYKWSQEISERL 302


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 59  PSLIFDYFRDFGVKTHVSP 3
           P L+FDYF D G K HV+P
Sbjct: 53  PDLLFDYFID-GHKIHVNP 70


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 409 YLVPXSFCSYVPYAVXVSASSFHTGRDERVCVLAQTSL 296
           Y VP      +  A+ V A   H G+D+  C LA+  L
Sbjct: 65  YDVPFLINDRIDVALAVGADGVHIGQDDMDCALARKIL 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,836
Number of Sequences: 5004
Number of extensions: 43038
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 828548732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)