Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D03_e116_07.seq
         (1484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526...   169   6e-42
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725...   165   8e-41
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165...   131   1e-35
01_06_0355 + 28657833-28660665,28660762-28661126                       31   2.3  

>01_06_0550 -
           30151494-30151526,30151620-30151706,30152458-30152628,
           30152716-30152757,30152856-30152939
          Length = 138

 Score =  169 bits (410), Expect = 6e-42
 Identities = 79/124 (63%), Positives = 98/124 (79%), Gaps = 1/124 (0%)
 Frame = +1

Query: 67  TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 243
           T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V   + +FVF F+T+F
Sbjct: 11  TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70

Query: 244 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTKKSK 423
           GGGKSTGF LIYD LD AKK+EPK+RL R+GL  K   +R Q  ERKNR  K+RG KK+K
Sbjct: 71  GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTK 130

Query: 424 VGAA 435
            G A
Sbjct: 131 AGDA 134


>02_02_0153 -
           7258002-7258034,7258137-7258223,7258991-7259161,
           7259261-7259386
          Length = 138

 Score =  165 bits (401), Expect = 8e-41
 Identities = 78/124 (62%), Positives = 97/124 (78%), Gaps = 1/124 (0%)
 Frame = +1

Query: 67  TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 243
           T+RTRKFMTNRLL+RKQ V +VLHPG+  VSK +++EKLAK+Y+V   + +FVF F+T+F
Sbjct: 11  TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70

Query: 244 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTKKSK 423
           GGGKSTGF LIYD LD AKK+EPK+RL R+GL  K   +R Q  ERKNR  K+RG KK+K
Sbjct: 71  GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTK 130

Query: 424 VGAA 435
            G A
Sbjct: 131 AGDA 134


>06_03_0440 +
           20815528-20815653,20815742-20815912,20816501-20816584,
           20818831-20818917,20819044-20819076
          Length = 166

 Score =  131 bits (316), Expect(2) = 1e-35
 Identities = 60/89 (67%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
 Frame = +1

Query: 67  TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 243
           T+RTRKFMTNRLL+RKQ V +VLHPG+  VSK +++EKLAK+Y+V   + +FVF F+T+F
Sbjct: 11  TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70

Query: 244 GGGKSTGFALIYDTLDLAKKFEPKHRLAR 330
           GGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 71  GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99



 Score = 38.3 bits (85), Expect(2) = 1e-35
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = +1

Query: 331 HGLYEKKRPTRXQRXERKNRMXKVRGTKKSKVGAA 435
           +GL  K   +R Q  ERKNR  K+RG KK+K G A
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDA 162


>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 227 PNTKTTSGVTLYILASFSRISVLLTVGFPGCKTSHTICLRANNLLVINLRVRIVA 63
           PN    S +TL  L   + +  L  +GFP CK  H +  + + LL + L   I+A
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLLKVVLIPSILA 724


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,694,331
Number of Sequences: 37544
Number of extensions: 291471
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4745262172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)