Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D03_e116_07.seq
         (1484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.33 
SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.1  

>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 33.9 bits (74), Expect = 0.33
 Identities = 22/76 (28%), Positives = 30/76 (39%)
 Frame = +1

Query: 382  KNRMXKVRGTKKSKVGAAPQEVM*RLGL*VNNNPKXVXNXKKXSRGGPVPKVSL*XSRIT 561
            +  + K     + + G A   V+ ++GL     PK   N  K SRG P P      S  T
Sbjct: 1576 EQNVEKTESLGEEQQGGATDAVLQKIGLDEAEKPKEDKNEDKESRGSPSPPPGPLRSNQT 1635

Query: 562  IHXPXXYNXRDWGXPW 609
            +  P     RDW   W
Sbjct: 1636 LTSP-----RDWTSTW 1646


>SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 550 SRITIHXPXXYNXRDWGXP 606
           SRITIH P  Y  RDW  P
Sbjct: 23  SRITIHWPSFYKRRDWENP 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,264,073
Number of Sequences: 59808
Number of extensions: 336927
Number of successful extensions: 2797
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2797
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4800750793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)