Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D03_e116_07.seq
         (1484 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537975-1|CAD97939.1|  132|Homo sapiens hypothetical protein pr...   214   6e-55
U12202-2|AAB08007.1|  130|Homo sapiens ribosomal protein S24 pro...   214   8e-55
U12202-1|AAB08006.1|  133|Homo sapiens ribosomal protein S24 pro...   214   8e-55
M31520-2|AAA36588.1|  133|Homo sapiens ribosomal protein S24 pro...   214   8e-55
BC071926-1|AAH71926.1|  130|Homo sapiens ribosomal protein S24 p...   214   8e-55
BC000523-1|AAH00523.1|  130|Homo sapiens ribosomal protein S24 p...   214   8e-55
AL512628-3|CAI16468.1|  133|Homo sapiens ribosomal protein S24 p...   214   8e-55
AL512628-2|CAI16467.1|  130|Homo sapiens ribosomal protein S24 p...   214   8e-55

>BX537975-1|CAD97939.1|  132|Homo sapiens hypothetical protein
           protein.
          Length = 132

 Score =  214 bits (523), Expect = 6e-55
 Identities = 100/128 (78%), Positives = 111/128 (86%)
 Frame = +1

Query: 61  TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 240
           T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4   TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query: 241 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTKKS 420
           FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +R QR ERKNRM KVRGT K+
Sbjct: 64  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSREQRKERKNRMKKVRGTAKA 123

Query: 421 KVGAAPQE 444
            VGA  ++
Sbjct: 124 NVGAGKKK 131


>U12202-2|AAB08007.1|  130|Homo sapiens ribosomal protein S24
           protein.
          Length = 130

 Score =  214 bits (522), Expect = 8e-55
 Identities = 100/124 (80%), Positives = 109/124 (87%)
 Frame = +1

Query: 61  TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 240
           T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4   TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query: 241 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTKKS 420
           FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +R QR ERKNRM KVRGT K+
Sbjct: 64  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123

Query: 421 KVGA 432
            VGA
Sbjct: 124 NVGA 127


>U12202-1|AAB08006.1|  133|Homo sapiens ribosomal protein S24
           protein.
          Length = 133

 Score =  214 bits (522), Expect = 8e-55
 Identities = 100/124 (80%), Positives = 109/124 (87%)
 Frame = +1

Query: 61  TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 240
           T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4   TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query: 241 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTKKS 420
           FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +R QR ERKNRM KVRGT K+
Sbjct: 64  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123

Query: 421 KVGA 432
            VGA
Sbjct: 124 NVGA 127


>M31520-2|AAA36588.1|  133|Homo sapiens ribosomal protein S24
           protein.
          Length = 133

 Score =  214 bits (522), Expect = 8e-55
 Identities = 100/124 (80%), Positives = 109/124 (87%)
 Frame = +1

Query: 61  TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 240
           T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4   TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query: 241 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTKKS 420
           FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +R QR ERKNRM KVRGT K+
Sbjct: 64  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123

Query: 421 KVGA 432
            VGA
Sbjct: 124 NVGA 127


>BC071926-1|AAH71926.1|  130|Homo sapiens ribosomal protein S24
           protein.
          Length = 130

 Score =  214 bits (522), Expect = 8e-55
 Identities = 100/124 (80%), Positives = 109/124 (87%)
 Frame = +1

Query: 61  TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 240
           T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4   TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query: 241 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTKKS 420
           FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +R QR ERKNRM KVRGT K+
Sbjct: 64  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123

Query: 421 KVGA 432
            VGA
Sbjct: 124 NVGA 127


>BC000523-1|AAH00523.1|  130|Homo sapiens ribosomal protein S24
           protein.
          Length = 130

 Score =  214 bits (522), Expect = 8e-55
 Identities = 100/124 (80%), Positives = 109/124 (87%)
 Frame = +1

Query: 61  TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 240
           T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4   TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query: 241 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTKKS 420
           FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +R QR ERKNRM KVRGT K+
Sbjct: 64  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123

Query: 421 KVGA 432
            VGA
Sbjct: 124 NVGA 127


>AL512628-3|CAI16468.1|  133|Homo sapiens ribosomal protein S24
           protein.
          Length = 133

 Score =  214 bits (522), Expect = 8e-55
 Identities = 100/124 (80%), Positives = 109/124 (87%)
 Frame = +1

Query: 61  TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 240
           T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4   TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query: 241 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTKKS 420
           FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +R QR ERKNRM KVRGT K+
Sbjct: 64  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123

Query: 421 KVGA 432
            VGA
Sbjct: 124 NVGA 127


>AL512628-2|CAI16467.1|  130|Homo sapiens ribosomal protein S24
           protein.
          Length = 130

 Score =  214 bits (522), Expect = 8e-55
 Identities = 100/124 (80%), Positives = 109/124 (87%)
 Frame = +1

Query: 61  TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 240
           T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4   TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query: 241 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNRMXKVRGTKKS 420
           FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +R QR ERKNRM KVRGT K+
Sbjct: 64  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKA 123

Query: 421 KVGA 432
            VGA
Sbjct: 124 NVGA 127


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,667,288
Number of Sequences: 237096
Number of extensions: 1590664
Number of successful extensions: 2642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2642
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 21978462734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)