Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D03_e116_07.seq
         (1484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal pro...   175   9e-44
Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical pr...    42   8e-04
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    38   0.024
Z46343-6|CAL36520.1|  366|Caenorhabditis elegans Hypothetical pr...    29   8.4  
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chlor...    29   8.4  
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chlor...    29   8.4  
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo...    29   8.4  

>AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 24 protein.
          Length = 131

 Score =  175 bits (425), Expect = 9e-44
 Identities = 82/123 (66%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
 Frame = +1

Query: 67  TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 246
           TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V  FGF++  G
Sbjct: 6   TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIG 65

Query: 247 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRXQRXERKNRMXKVRGTKKSK 423
           GGKS GFAL+YDT+D AKKFEPK+RL R GL  K ++P R QR ERKNR  KVRGT K+K
Sbjct: 66  GGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATKVEKPGRKQRKERKNRQKKVRGTAKAK 125

Query: 424 VGA 432
           V A
Sbjct: 126 VSA 128


>Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical
           protein T26G10.3 protein.
          Length = 91

 Score = 42.3 bits (95), Expect = 8e-04
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +1

Query: 118 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 216
           MV +V+ PG+PT  K +IREK+A  Y + PD +
Sbjct: 1   MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 37.5 bits (83), Expect = 0.024
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 262 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRXQRXERKNR 390
           GF L+YDT D A K++P+H  + H      R +  +R E++ R
Sbjct: 54  GFTLVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95


>Z46343-6|CAL36520.1|  366|Caenorhabditis elegans Hypothetical
           protein T23F11.3b protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +1

Query: 376 ERKNRMXKVRGTKKSKVGAAPQEVM*RLGL*VNNN 480
           E++N   + RGTKK+ + A+  E++  LG+ ++NN
Sbjct: 196 EQENVPSEKRGTKKTIIQASTSELLRGLGIFISNN 230


>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform a protein.
          Length = 1050

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 7   DTCVFTPKSRK*SKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 147
           D C+ +P+ RK S  S   A +RT  F   +  + K+M+ D+   PGK
Sbjct: 39  DNCIVSPRFRKSSSRS---ALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83


>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform b protein.
          Length = 1085

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 7   DTCVFTPKSRK*SKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 147
           D C+ +P+ RK S  S   A +RT  F   +  + K+M+ D+   PGK
Sbjct: 39  DNCIVSPRFRKSSSRS---ALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83


>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
           chloride channel CLH-4b protein.
          Length = 1084

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 7   DTCVFTPKSRK*SKMSEGTATIRTRKFMTNRLLARKQMVCDV-LHPGK 147
           D C+ +P+ RK S  S   A +RT  F   +  + K+M+ D+   PGK
Sbjct: 39  DNCIVSPRFRKSSSRS---ALVRTTSFNHKQYRSIKEMIIDLKQEPGK 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,278,582
Number of Sequences: 27780
Number of extensions: 255165
Number of successful extensions: 691
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4266737980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)