Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D02_e108_08.seq
         (1486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    87   4e-18
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    85   3e-17
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    79   2e-15
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    27   8.8  

>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 87.4 bits (207), Expect = 4e-18
 Identities = 43/109 (39%), Positives = 58/109 (53%)
 Frame = +3

Query: 177 SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 356
           S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ N
Sbjct: 2   SASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLN 61

Query: 357 IGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503
           IGS                                    D+DMGFGLFD
Sbjct: 62  IGSAAAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 84.6 bits (200), Expect = 3e-17
 Identities = 44/109 (40%), Positives = 59/109 (54%)
 Frame = +3

Query: 177 SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 356
           S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ N
Sbjct: 2   SASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLN 61

Query: 357 IGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503
           IGSG                                   D+DMGFGLFD
Sbjct: 62  IGSG-AGAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 40/109 (36%), Positives = 57/109 (52%)
 Frame = +3

Query: 177 SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 356
           S +ELA  Y+ALIL D+ + +T +K+ ++ KA  V+VEP W  +FAKALEG ++++L+ N
Sbjct: 2   SASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLN 61

Query: 357 IGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503
           IGS                                    D+DMGFGLFD
Sbjct: 62  IGS-AGAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 302 RPVRLNIYSSRFQYG*DFLTGNGDIVIYQDKGGVNTS 192
           +PV L   +++F +G   +T N D  I+  K G+N S
Sbjct: 66  KPVSLPASTTQFTFGKPAVTANNDSDIHLKKRGLNKS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,713,318
Number of Sequences: 5004
Number of extensions: 57134
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 828548732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)