Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D02_e108_08.seq
         (1486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    92   9e-19
09_02_0036 + 3217163-3217584,3217752-3218322                           30   4.1  
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718...    29   9.4  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 92.3 bits (219), Expect = 9e-19
 Identities = 46/109 (42%), Positives = 58/109 (53%)
 Frame = +3

Query: 177 SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 356
           S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V DLI +
Sbjct: 2   SSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILS 61

Query: 357 IGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503
           +GSG                                   DDDMGF LFD
Sbjct: 62  VGSGGGAAPVAAAAAPAAGGGAAAAPAAEEKKEEAKEESDDDMGFSLFD 110


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 658 ITIHWPSFYNVV-TGKTLALPNLIALQH 738
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>03_02_0295 +
           7178921-7179451,7180083-7180448,7181316-7181450,
           7181533-7181606,7181960-7181999,7182178-7182223,
           7182398-7182477,7182585-7182760,7182848-7182973,
           7183338-7183430,7184135-7184260,7184815-7184884,
           7185262-7185344,7186216-7186329,7186884-7186983,
           7187557-7187583
          Length = 728

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +3

Query: 150 LARITFKMASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKAL 323
           LAR  +K A KA+  C Y AL  + D+  +T E+ S +L +     E  W   F   L
Sbjct: 365 LARQWYKAAVKADPLC-YEALECLVDNYMLTCEEESELLSSLKFGKEDGWLSAFYSCL 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,085,127
Number of Sequences: 37544
Number of extensions: 462950
Number of successful extensions: 828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4745262172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)