BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030712_D02_e108_08.seq (1486 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic ri... 102 3e-21 BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, larg... 102 3e-21 BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, larg... 102 3e-21 AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1 pr... 102 3e-21 CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein. 102 4e-21 AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal phosph... 100 2e-20 CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein. 96 3e-19 >M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic ribosomal phosphoprotein P1 mRNA, complete cds. ). Length = 114 Score = 102 bits (245), Expect = 3e-21 Identities = 52/114 (45%), Positives = 65/114 (57%), Gaps = 3/114 (2%) Frame = +3 Query: 171 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 350 MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60 Query: 351 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503 N+G+G DDDMGFGLFD Sbjct: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114 >BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, large, P1 protein. Length = 114 Score = 102 bits (245), Expect = 3e-21 Identities = 52/114 (45%), Positives = 65/114 (57%), Gaps = 3/114 (2%) Frame = +3 Query: 171 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 350 MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60 Query: 351 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503 N+G+G DDDMGFGLFD Sbjct: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114 >BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, large, P1 protein. Length = 114 Score = 102 bits (245), Expect = 3e-21 Identities = 52/114 (45%), Positives = 65/114 (57%), Gaps = 3/114 (2%) Frame = +3 Query: 171 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 350 MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60 Query: 351 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503 N+G+G DDDMGFGLFD Sbjct: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114 >AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1 protein. Length = 114 Score = 102 bits (245), Expect = 3e-21 Identities = 52/114 (45%), Positives = 65/114 (57%), Gaps = 3/114 (2%) Frame = +3 Query: 171 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 350 MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60 Query: 351 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503 N+G+G DDDMGFGLFD Sbjct: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114 >CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein. Length = 114 Score = 102 bits (244), Expect = 4e-21 Identities = 51/114 (44%), Positives = 65/114 (57%), Gaps = 3/114 (2%) Frame = +3 Query: 171 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 350 MAS +ELAC+YSAL+L DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI Sbjct: 1 MASVSELACIYSALVLHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60 Query: 351 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503 N+G+G DDDMGFGLFD Sbjct: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114 >AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal phosphoprotein P1 protein. Length = 113 Score = 100 bits (239), Expect = 2e-20 Identities = 51/113 (45%), Positives = 64/113 (56%), Gaps = 3/113 (2%) Frame = +3 Query: 171 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 350 MAS +ELAC+YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60 Query: 351 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLF 500 N+G+G DDDMGFGLF Sbjct: 61 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLF 113 >CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein. Length = 114 Score = 95.9 bits (228), Expect = 3e-19 Identities = 50/114 (43%), Positives = 64/114 (56%), Gaps = 3/114 (2%) Frame = +3 Query: 171 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 350 MAS +ELA +YSALIL DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI Sbjct: 1 MASVSELARIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60 Query: 351 TNIGSG---VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503 ++G+G DDDMGFGLFD Sbjct: 61 CDVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 145,917,262 Number of Sequences: 237096 Number of extensions: 2672546 Number of successful extensions: 3670 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 3505 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3666 length of database: 76,859,062 effective HSP length: 93 effective length of database: 54,809,134 effective search space used: 21978462734 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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