Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D02_e108_08.seq
         (1486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...   121   2e-27
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...   117   2e-26
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    30   3.7  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score =  121 bits (291), Expect = 2e-27
 Identities = 58/111 (52%), Positives = 70/111 (63%)
 Frame = +3

Query: 171 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 350
           MAS  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60

Query: 351 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503
           T++ SG                                   DDDMGFGLFD
Sbjct: 61  TSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score =  117 bits (282), Expect = 2e-26
 Identities = 57/111 (51%), Positives = 69/111 (62%)
 Frame = +3

Query: 171 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 350
           MAS  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60

Query: 351 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503
           T++ SG                                   DDDMGFGLFD
Sbjct: 61  TSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 22/90 (24%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
 Frame = +3

Query: 246 EKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXX 425
           + +  IL A  VD +     L    L G  V +LI    +G+                  
Sbjct: 21  DDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGLVSVSGGAAPAAAAAPAAG 80

Query: 426 XXXXXXXXXXXXXXX----XDDDMGFGLFD 503
                               DDDMGFGLFD
Sbjct: 81  GAAPAADSKPAKKEEPKEESDDDMGFGLFD 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,278,652
Number of Sequences: 27780
Number of extensions: 357468
Number of successful extensions: 677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4266737980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)