Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D02_e108_08.seq
         (1486 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)...    85   9e-17
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)...    85   9e-17
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)...    85   1e-16
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)...    85   1e-16
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       84   2e-16
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative     79   6e-15
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co...    38   0.022
At3g03770.1 68416.m00383 leucine-rich repeat transmembrane prote...    31   1.9  

>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 85.4 bits (202), Expect = 9e-17
 Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
 Frame = +3

Query: 171 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 350
           M++  ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 351 TNIGSGVXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503
            N+G+G                                     D D+GFGLFD
Sbjct: 61  MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113


>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 85.4 bits (202), Expect = 9e-17
 Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
 Frame = +3

Query: 171 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 350
           M++  ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 351 TNIGSGVXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503
            N+G+G                                     D D+GFGLFD
Sbjct: 61  MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113


>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 85.0 bits (201), Expect = 1e-16
 Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
 Frame = +3

Query: 171 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 350
           M++  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 351 TNIGSGVXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503
            N+G+G                                    D D+GFGLFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112


>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 85.0 bits (201), Expect = 1e-16
 Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
 Frame = +3

Query: 171 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 350
           M++  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 351 TNIGSGVXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503
            N+G+G                                    D D+GFGLFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112


>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 84.2 bits (199), Expect = 2e-16
 Identities = 43/113 (38%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
 Frame = +3

Query: 171 MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 350
           M++  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 351 TNIGSGVXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 503
            N+G+G                                     D D+GFGLFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113


>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
          Length = 111

 Score = 79.4 bits (187), Expect = 6e-15
 Identities = 36/64 (56%), Positives = 46/64 (71%)
 Frame = +3

Query: 177 SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 356
           S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK  E  N+ DLI N
Sbjct: 2   STSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIMN 61

Query: 357 IGSG 368
           +G+G
Sbjct: 62  VGAG 65


>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
           contains weak similarity to Swiss-Prot:52855 60S acidic
           ribosomal protein P1 (L12) [Zea mays]
          Length = 46

 Score = 37.5 bits (83), Expect = 0.022
 Identities = 20/41 (48%), Positives = 28/41 (68%)
 Frame = +3

Query: 186 ELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 308
           ELAC Y+AL+L D    VT   +ST++K A +++E YWP L
Sbjct: 5   ELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39


>At3g03770.1 68416.m00383 leucine-rich repeat transmembrane protein
           kinase, putative may contain C-terminal ser/thr protein
           kinase domain, similar to serine/threonine protein
           kinase Pto GB:AAB47421 [Lycopersicon esculentum]
          Length = 802

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 872 LTXNFXKNINAYNLPLAIQGXATVGXGRSGAGP 774
           L  N    +++YNLPL ++G   VG   S +GP
Sbjct: 617 LDNNLAAKLSSYNLPLLVEGLGKVGQVGSRSGP 649


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,398,604
Number of Sequences: 28952
Number of extensions: 332939
Number of successful extensions: 584
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3951822720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)