Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_D01_e100_07.seq
         (1458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   242   7e-65
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    55   3e-08
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   3.7  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   8.6  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  242 bits (593), Expect = 7e-65
 Identities = 114/202 (56%), Positives = 148/202 (73%)
 Frame = +1

Query: 181 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 360
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG + ++MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 361 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 540
              P LE+LLP ++GNVGFVFT  DL +VR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127

Query: 541 LGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVV 720
           + P KTSFFQAL IPTKI++GTIEI +DVH++    KVG SEATLLNMLNISPF+YG+ V
Sbjct: 128 MEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDV 187

Query: 721 KQVXDSGTIFAPAILDXKPEDL 786
             + D G +F+P ILD   EDL
Sbjct: 188 LTIYDQGNVFSPEILDVSEEDL 209


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 18/207 (8%)
 Frame = +1

Query: 151 KMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNT 330
           K G E KA      F  + Q LD +   +I    N+ +  +++IR   +G S + MGK  
Sbjct: 17  KKGHEGKAA----LFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWKG-SRIFMGKTK 71

Query: 331 MMRKAIKDHLETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP-ARPGAI 501
           +M KA+    E   A  + KL   + G VG +FT     +V     E+ VQ   AR GA+
Sbjct: 72  VMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAV 130

Query: 502 APLSVVIPA----HNTGLGPEKTSFF---------QALSIPTKISKGTIEIINDVHILKP 642
           AP + VIPA       G  P +             + L +PT +  G + ++ D  +   
Sbjct: 131 APFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTE 190

Query: 643 GDKVGASEATLLNMLNI--SPFSYGLV 717
           G ++ + +  LL +  I  + F  GL+
Sbjct: 191 GQQLDSRQTRLLKLFGITAAEFKVGLL 217


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 617 IISIVPFEILVGMERAWKKEVFSGPRPVL*AGMTTDNGAMAP 492
           IIS  P + L+G+  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 728 TCLTTRPYEKGEMFNMLRRVASEAP 654
           + LT  PYEKGE  N +R   S  P
Sbjct: 279 SALTRLPYEKGEFINFVRYHPSITP 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,512,957
Number of Sequences: 5004
Number of extensions: 86249
Number of successful extensions: 251
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 814742980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)