Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_D01_e100_07.seq
(1458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 248 8e-66
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 248 8e-66
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 247 1e-65
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 31 2.3
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 2.3
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 29 9.2
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 248 bits (607), Expect = 8e-66
Identities = 126/236 (53%), Positives = 161/236 (68%), Gaps = 2/236 (0%)
Frame = +1
Query: 160 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 339
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 340 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 513
+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 514 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 693
VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I
Sbjct: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGI 183
Query: 694 SPFSYGLVVKQVXDSGTIFAPAILDXKPEDLREKFLAXXXXXXXXXXXXIGNPTVA 861
PFSYGLV+ V DSG++F+P +LD EDL EKF A I PT+A
Sbjct: 184 RPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKF-ASGVSMVASVSLAISYPTIA 238
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 248 bits (607), Expect = 8e-66
Identities = 126/236 (53%), Positives = 161/236 (68%), Gaps = 2/236 (0%)
Frame = +1
Query: 160 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 339
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 340 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 513
+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 514 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 693
VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I
Sbjct: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGI 183
Query: 694 SPFSYGLVVKQVXDSGTIFAPAILDXKPEDLREKFLAXXXXXXXXXXXXIGNPTVA 861
PFSYGLV+ V DSG++F+P +LD EDL EKF A I PT+A
Sbjct: 184 RPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKF-ASGVSMVASVSLAISYPTIA 238
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 247 bits (605), Expect = 1e-65
Identities = 125/236 (52%), Positives = 161/236 (68%), Gaps = 2/236 (0%)
Frame = +1
Query: 160 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMR 339
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 340 KAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 513
+ IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 514 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 693
VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I
Sbjct: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGI 183
Query: 694 SPFSYGLVVKQVXDSGTIFAPAILDXKPEDLREKFLAXXXXXXXXXXXXIGNPTVA 861
PFSYGLV+ V DSG++F+P +LD +DL EKF A I PT+A
Sbjct: 184 RPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKF-ASGVSMVASVSLAISYPTIA 238
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 31.1 bits (67), Expect = 2.3
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = +1
Query: 373 ALEKL-LPH--IKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSV----VIPAH 531
AL+KL LPH ++GN+GF+ + + + D +L++ A P + LS I H
Sbjct: 401 ALQKLVLPHNNLEGNMGFLSSLSECRQLEDLILDHNSFVGALPDHLGNLSARLISFIADH 460
Query: 532 N--TGLGPEKTSFFQALSI 582
N G PEK S +L +
Sbjct: 461 NKLAGSLPEKMSNLSSLEL 479
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.1 bits (67), Expect = 2.3
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +1
Query: 370 PALEK-LLPHIKGN---VGFVFTRGDLVDV--RDKLLENKVQAPARPGAIAPLSVVIPA 528
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 29.1 bits (62), Expect = 9.2
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -1
Query: 504 SNGSRTSRGLDFVLQQFITHINKISTGEDKANISLD 397
+NG+R G + L+Q++T + ++TGE K ++ +
Sbjct: 63 NNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFE 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,283,470
Number of Sequences: 37544
Number of extensions: 674699
Number of successful extensions: 1547
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4640843200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -