Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_D01_e100_07.seq
(1458 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 321 9e-88
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 62 1e-09
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p... 30 4.7
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 29 8.3
Z77652-7|CAB01119.1| 341|Caenorhabditis elegans Hypothetical pr... 29 8.3
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 29 8.3
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 321 bits (788), Expect = 9e-88
Identities = 142/217 (65%), Positives = 183/217 (84%)
Frame = +1
Query: 154 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 333
M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RGH+ +LMGKNTM
Sbjct: 1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60
Query: 334 MRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLS 513
+RKA++ HL NP+LEKLLPHI NVGFVFT+ DL ++R KLLEN+ APA+ GAIAP
Sbjct: 61 IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCD 120
Query: 514 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 693
V +P NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH++K GDKVGASE+ LLNML +
Sbjct: 121 VKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGV 180
Query: 694 SPFSYGLVVKQVXDSGTIFAPAILDXKPEDLREKFLA 804
+PFSYGLVV+QV D GT++ P +LD E+LR++FL+
Sbjct: 181 TPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLS 217
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 61.7 bits (143), Expect = 1e-09
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 3/195 (1%)
Frame = +1
Query: 148 SKMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKN 327
+K+ ++ K T K+N ++ +D+Y FI N+ S + IR + +S GKN
Sbjct: 13 TKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENSRFFFGKN 71
Query: 328 TMMRKAIKDHLETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAI 501
++ A+ A L K +KG G +FT +V + E + AR G +
Sbjct: 72 NVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDV 131
Query: 502 APLSVVIP-AHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLL 678
A +VV+P + + L +PTK+ KG I + + K G+ + +A +L
Sbjct: 132 ATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITLYQQFEVCKEGEPLTVEQAKIL 191
Query: 679 NMLNISPFSYGLVVK 723
+ + L+ K
Sbjct: 192 KHFEVKMSQFRLIFK 206
>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
protein F26D2.10 protein.
Length = 1213
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -1
Query: 699 GRDVQHVEKSSFRSSHLITRLQDM-DIIDNFNSTL*NLSGDGKSLEERSLLRTKA 538
G + + E F + ++TRL ++ DII N+TL ++G + L +R R +A
Sbjct: 425 GNQIVNYETFFFPAHSIMTRLSNVKDIIKELNTTLNFMTGSNEQLRDRFHNRNRA 479
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 29.1 bits (62), Expect = 8.3
Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +1
Query: 232 CFIVGAD--NVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKG 405
C G D + GS + + R + GH+ +L + + ++DH+++ ++K+ +
Sbjct: 181 CGFCGKDFFHEGSLREHRRRFHMTGHTCLLCNRQIPENETVRDHMKSQHNIKKVYNCLCC 240
Query: 406 NVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSV 516
N F+ + L+ L+ + RPG + PL++
Sbjct: 241 NWTFL-NQVHLIS-HKTCLKQTGKPCCRPGHMEPLAI 275
>Z77652-7|CAB01119.1| 341|Caenorhabditis elegans Hypothetical
protein C06B3.10 protein.
Length = 341
Score = 29.1 bits (62), Expect = 8.3
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -1
Query: 468 VLQQFITHI-NKISTGEDKANISLDVRKQFFESWICFKMVLDGFPHHGVFAHEHNAVTTQ 292
++ F+ HI + IS NIS++ Q I LD P+ + NA+ TQ
Sbjct: 254 IIPVFLMHIPSTISMCAAFTNISIEFISQILSCTISLYPALDPLPNFFIIKSYRNAI-TQ 312
Query: 291 *NTDLLHLL 265
TD L LL
Sbjct: 313 YLTDFLRLL 321
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 29.1 bits (62), Expect = 8.3
Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +1
Query: 232 CFIVGAD--NVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKG 405
C G D + GS + + R + GH+ +L + + ++DH+++ ++K+ +
Sbjct: 181 CGFCGKDFFHEGSLREHRRRFHMTGHTCLLCNRQIPENETVRDHMKSQHNIKKVYNCLCC 240
Query: 406 NVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSV 516
N F+ + L+ L+ + RPG + PL++
Sbjct: 241 NWTFL-NQVHLIS-HKTCLKQTGKPCCRPGHMEPLAI 275
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,967,807
Number of Sequences: 27780
Number of extensions: 521545
Number of successful extensions: 1351
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4173077878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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