Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_D01_e100_07.seq
(1458 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 244 1e-64
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 244 1e-64
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 239 2e-63
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 46 5e-05
At3g50610.1 68416.m05534 hypothetical protein 31 1.4
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain... 30 4.4
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 244 bits (597), Expect = 1e-64
Identities = 122/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Frame = +1
Query: 154 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 333
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 334 MRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 507
M+++++ H E N A+ LLP ++GNVG +FT+GDL +V +++ + KV APAR G +AP
Sbjct: 61 MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 508 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 687
+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
Query: 688 NISPFSYGLVVKQVXDSGTIFAPAILDXKPEDLREKFLAXXXXXXXXXXXXIGNPTVA 861
I PFSYGLVV+ V D+G++F+P +LD + L EKF A + PT+A
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKF-ASGISMVTSLALAVSYPTLA 237
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 244 bits (597), Expect = 1e-64
Identities = 122/238 (51%), Positives = 163/238 (68%), Gaps = 2/238 (0%)
Frame = +1
Query: 154 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 333
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 334 MRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 507
M+++++ H E N A+ LLP ++GNVG +FT+GDL +V +++ + KV APAR G +AP
Sbjct: 61 MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 508 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 687
+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
Query: 688 NISPFSYGLVVKQVXDSGTIFAPAILDXKPEDLREKFLAXXXXXXXXXXXXIGNPTVA 861
I PFSYGLVV+ V D+G++F+P +LD + L EKF A + PT+A
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKF-ASGISMVTSLALAVSYPTLA 237
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 239 bits (586), Expect = 2e-63
Identities = 122/233 (52%), Positives = 160/233 (68%), Gaps = 2/233 (0%)
Frame = +1
Query: 169 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAI 348
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM++++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66
Query: 349 KDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVI 522
+ H + N A LLP ++GNVG +FT+GDL +V +++ + KV APAR G +AP+ VV+
Sbjct: 67 RIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVV 126
Query: 523 PAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPF 702
NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PF
Sbjct: 127 QPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPF 186
Query: 703 SYGLVVKQVXDSGTIFAPAILDXKPEDLREKFLAXXXXXXXXXXXXIGNPTVA 861
SYGLVV+ V D+G++F P +L+ +DL EKF A I PTVA
Sbjct: 187 SYGLVVESVYDNGSVFNPEVLNLTEDDLVEKF-AAGVSMITALSLAISYPTVA 238
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 46.4 bits (105), Expect = 5e-05
Identities = 38/191 (19%), Positives = 85/191 (44%), Gaps = 3/191 (1%)
Frame = +1
Query: 151 KMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNT 330
K GRE K + I + +++Y ++ +N+ + + ++ R R + +G N
Sbjct: 17 KKGREHKECIVNG----IREAVEKYSSVYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNK 72
Query: 331 MMRKAIKDHLETN--PALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIA 504
+M+ A+ E + K+ ++G+ G + T +V + +R G+IA
Sbjct: 73 VMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIA 132
Query: 505 PLSVVIPAHNTG-LGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLN 681
+V + E + L +P +++KGT+E++ D + + G ++ A +L
Sbjct: 133 VETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILR 192
Query: 682 MLNISPFSYGL 714
+L + ++ L
Sbjct: 193 LLRMKMATFKL 203
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 31.5 bits (68), Expect = 1.4
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 352 DHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD-KLLENKVQAPARPGAIAPLSVVIPA 528
D + T+P + H KGNV + D KLL+ VQ + G+ + P
Sbjct: 31 DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90
Query: 529 HNTGLGPEK 555
H+ G+G +K
Sbjct: 91 HSPGVGHKK 99
>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
Pfam profile PF04434: SWIM zinc finger
Length = 750
Score = 29.9 bits (64), Expect = 4.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 780 LRLXVENCRREDGTGVVHLFDNKTIRKGRDVQHVEKSSFRS 658
++L E R + GVVHL D+ T+ K HV K S
Sbjct: 144 VKLERETDRNSESDGVVHLVDSSTLNKDSISGHVSKPCMSS 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,028,931
Number of Sequences: 28952
Number of extensions: 502934
Number of successful extensions: 1278
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3865075392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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