Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_C10_e171_06.seq
         (1493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    40   7e-05
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    35   0.002
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                33   0.005
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    32   0.015
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    32   0.015
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    27   0.32 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    27   0.42 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   3.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   3.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   3.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   6.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 39.5 bits (88), Expect = 7e-05
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +2

Query: 53  YLHSARILHRDIKPGNLLVNSNCVLKICDXWFGASRRTGR 172
           YLHS  I++RD+KP NLL++S   +K+ D  F      GR
Sbjct: 481 YLHSRNIIYRDLKPENLLLDSQGYVKLVDFGFAKRLDHGR 520



 Score = 32.3 bits (70), Expect = 0.011
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 201 TQYYRAPEILMGANHYTAAVDVWSVGCIFGELLGRRILFQAQSPVQQLELITELLGTPSL 380
           T  Y APE+++   H  +A D WS+G +  ELL     F    P++   +I  L G  ++
Sbjct: 528 TPEYVAPEVILNKGHDISA-DYWSLGVLMFELLTGTPPFTGGDPMKTYNII--LKGIDAI 584

Query: 381 E 383
           E
Sbjct: 585 E 585


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 34.7 bits (76), Expect = 0.002
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +2

Query: 32  GIXHEXKYLHSARILHRDIKPGNLLVNSNCVLKICDXWFGASR 160
           GI    +YL     +HRD+   N+LVN+  V KI D  FG SR
Sbjct: 743 GIASGMQYLAEMNYVHRDLAARNVLVNAALVCKIAD--FGLSR 783


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 33.5 bits (73), Expect = 0.005
 Identities = 15/36 (41%), Positives = 25/36 (69%)
 Frame = +2

Query: 50  KYLHSARILHRDIKPGNLLVNSNCVLKICDXWFGAS 157
           ++ H+A I+H D+KP N+L++ N   K+ D  FG+S
Sbjct: 169 QFCHNAGIVHADVKPKNILMSKNGQPKLTD--FGSS 202


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 31.9 bits (69), Expect = 0.015
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 14  WIPR---AAGIXHEXKYLHSARILHRDIKPGNLLVNSNCVLKICDXWF 148
           W+ R   A  +    +YLHS  ++HRD+K  N+L++     K+ D  F
Sbjct: 696 WLERIQIALDVLEGIRYLHSQGLVHRDVKLKNVLLDIENRAKLTDFGF 743



 Score = 29.9 bits (64), Expect = 0.059
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 195 VVTQYYRAPEILMGANHYTAAVDVWSVGCIF 287
           V T  + APE+L G  HY ++VDV++ G +F
Sbjct: 755 VGTPVHMAPELLSG--HYDSSVDVYAFGILF 783


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 31.9 bits (69), Expect = 0.015
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 14  WIPR---AAGIXHEXKYLHSARILHRDIKPGNLLVNSNCVLKICDXWF 148
           W+ R   A  +    +YLHS  ++HRD+K  N+L++     K+ D  F
Sbjct: 734 WLERIQIALDVLEGIRYLHSQGLVHRDVKLKNVLLDIENRAKLTDFGF 781



 Score = 29.9 bits (64), Expect = 0.059
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 195 VVTQYYRAPEILMGANHYTAAVDVWSVGCIF 287
           V T  + APE+L G  HY ++VDV++ G +F
Sbjct: 793 VGTPVHMAPELLSG--HYDSSVDVYAFGILF 821


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 27.5 bits (58), Expect = 0.32
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 53  YLHSARILHRDIKPGNLLVNSNCVLKICD 139
           +LH   I++RD+K  N+L++ +  +KI D
Sbjct: 100 FLHGRGIVYRDLKLDNVLLDQDGHIKIAD 128


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 27.1 bits (57), Expect = 0.42
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 35  IXHEXKYLHSARILHRDIKPGNLLVNS 115
           I     + H   ++HRD+KP NLL+ S
Sbjct: 18  ILESVHHCHHNGVVHRDLKPENLLLAS 44


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 556 PRSRTRYLEEGPVAL 600
           P++  ++LE+GPVAL
Sbjct: 145 PKNTNKFLEKGPVAL 159


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = +3

Query: 246 YTAAVDVWSVGC---IFGELL 299
           YT A+D+W+  C   +FG LL
Sbjct: 300 YTKAIDIWTGVCLTFVFGALL 320


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = +3

Query: 246 YTAAVDVWSVGC---IFGELL 299
           YT A+D+W+  C   +FG LL
Sbjct: 300 YTKAIDIWTGVCLTFVFGALL 320


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 246 YTAAVDVWSVGCI 284
           Y  A+DVW  GC+
Sbjct: 258 YVKALDVWMAGCM 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,160
Number of Sequences: 438
Number of extensions: 3532
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52156500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)