Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_C09_e163_05.seq
(1496 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 257 1e-68
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 251 1e-66
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 158 1e-38
02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356... 31 1.8
06_01_0738 + 5458182-5458374,5460512-5461766,5461861-5462053,546... 30 4.1
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468 29 9.5
02_04_0580 + 24065830-24065967,24066163-24067425 29 9.5
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 257 bits (630), Expect = 1e-68
Identities = 122/239 (51%), Positives = 164/239 (68%)
Frame = +1
Query: 178 KLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 357
K VPESV + L + +++ RK IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 358 RLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 537
+L R+AR +G +YV EAKL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126
Query: 538 VNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVED 717
+NMLR EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+ +N +IE+ L K +IIC+ED
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIED 186
Query: 718 LIHEIFTVGEKFKYASNFLWPFKLNNPTGGLAQEDDSXXXXXXXXXPARXKVNELLRRM 894
L+HEI TVG FK A+NFLWPFKL P GGL ++ + +NEL+RRM
Sbjct: 187 LVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGN-REDYINELIRRM 244
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 251 bits (614), Expect = 1e-66
Identities = 122/241 (50%), Positives = 163/241 (67%), Gaps = 6/241 (2%)
Frame = +1
Query: 190 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLAR 369
VPESV + + + SI+ RK IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 370 QARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 549
+AR +G +YV E KL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 550 RIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKR------LSKQNIICV 711
R EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+T+N +IE+ L K +IIC+
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICI 189
Query: 712 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGLAQEDDSXXXXXXXXXPARXKVNELLRR 891
EDL+HEI TVG FK A+NFLWPFKL P GGL ++ + +NEL+RR
Sbjct: 190 EDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGN-RENYINELIRR 248
Query: 892 M 894
M
Sbjct: 249 M 249
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 158 bits (383), Expect = 1e-38
Identities = 85/215 (39%), Positives = 126/215 (58%), Gaps = 3/215 (1%)
Frame = +1
Query: 163 KEDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIK 342
+E +++LP V E+V + +R K KR E +V+E+R K
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 343 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGV 513
E D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ GV
Sbjct: 63 ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120
Query: 514 FVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSK 693
F++ AT+ L + EP+I +G+PNLK+V++L+YK+G L+ + P+TSN LIEK L +
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGE 180
Query: 694 QNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNP 798
IIC+EDL+HEI +VG F+ ASNFL PFKL P
Sbjct: 181 YGIICLEDLVHEIASVGPHFREASNFLMPFKLKCP 215
>02_05_0756 -
31534011-31534141,31534235-31535338,31535448-31535692,
31535789-31535940,31536051-31536158
Length = 579
Score = 31.5 bits (68), Expect = 1.8
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -3
Query: 444 DTTNTDDKC*FSFTGHIIIATVTSLSCQSDFITLLDAVFFDILFGSLKDFFP 289
D TN +KC G+ A++ ++S QS I +LDA ++ G ++ FP
Sbjct: 382 DPTNMAEKCKEGPQGNRFAASLNNVSFQSPAIDVLDAYYYSSGHGVYEEDFP 433
>06_01_0738 +
5458182-5458374,5460512-5461766,5461861-5462053,
5462151-5462344,5462443-5462601,5462683-5463025
Length = 778
Score = 30.3 bits (65), Expect = 4.1
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +2
Query: 617 NAVSPN*TGSVSRSPPTHSSRRDL--ANRTSSALRISSMRYLLSVRSSSTQVTSCGHSN* 790
N V+ + + + S + +D+ A T SA +S ++ LS RS + + GHSN
Sbjct: 228 NGVASSVSSAAVNSTAVKTDAKDVVVATSTDSAGSVSDVKADLSNRSDTPPASGSGHSNH 287
Query: 791 TTRLEVWRKKTIHYVDGGDFGNPRGTRSTSSS 886
T+ + V K G D G +++S+
Sbjct: 288 TSDVTVSPAKGNAKDGGADTNKASGNVASTSN 319
>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
Length = 1078
Score = 29.1 bits (62), Expect = 9.5
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Frame = +1
Query: 403 GEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGY 582
G+ K I +RG + ++ + +L +LR ++ ++N R+ + WG+
Sbjct: 621 GKMKFLEHIGLRGCHSLAELPSSITELPKLRHLSIDE-TKINAIPRGFKRLENLEMLWGF 679
Query: 583 P-------------NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVE 714
P +L+ + L R + + VP +S + + K +K+N+IC+E
Sbjct: 680 PVHIIIENTGEYRCSLEELGPLSKLRKLKLIGLENVPYSSMATLAKLKTKENLICLE 736
>02_04_0580 + 24065830-24065967,24066163-24067425
Length = 466
Score = 29.1 bits (62), Expect = 9.5
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = +1
Query: 535 TVNMLRIAE--PYIAWGYPNLKSVRELVYKRG--FAKLNGKRVPITSNSLIEKRLSKQNI 702
T+ +L +A+ P A G+ + E+ + FA NG+ + S + I+ L
Sbjct: 71 TMAVLSVADSPPVSAIGFEGYEKRLEITFSEAPVFADPNGRGLRALSRAQIDSVLDLARC 130
Query: 703 ICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG 807
V +L +E+F +S F++P+K+ T G
Sbjct: 131 TIVSELSNEVFD-SYVLSESSLFVYPYKIVIKTCG 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,713,285
Number of Sequences: 37544
Number of extensions: 654507
Number of successful extensions: 1484
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4791670604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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