Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_C08_e155_06.seq
         (1504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    30   0.95 
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    29   1.3  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    29   1.3  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   5.1  
SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosacc...    27   8.9  

>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = -2

Query: 294 TPGRYLNSLSSRSLTAPLRSPCERRTCAAASTRVPPCLSKRETDCIFFPSFAREDA 127
           +PGR       R LTA  ++  + R C  AS      L K      F PS A  DA
Sbjct: 11  SPGRLWRVTKIRKLTAAKKNELQNRKCNQASNEEKKILYKSNFLDRFIPSKANSDA 66


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = -1

Query: 370 INISEELRRLNVFVISAEQSAQRPDNSGAVPELALFKE 257
           + ++ ++RRLN    S EQ +++  N+G++ EL L +E
Sbjct: 421 MGVAYDIRRLNHLGFSPEQLSKKSMNTGSIKELILDEE 458


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
 Frame = -2

Query: 306 SAPTTPGRYLNSLSSR-----SLTAPLRSPCERRTCAAASTRVPPCLSKRETDCIFFPSF 142
           +APT  G YL++ S+      SL++   SP +         R  P ++ R ++ +  PS 
Sbjct: 285 TAPTLDGSYLSNPSNSNPAVMSLSSNFPSPPKPNNPVYLPPRGNPTVNDRVSNVL--PSI 342

Query: 141 AREDASTSAARRSSPNSLISFTPS 70
              D+S +    +SP +L S+T S
Sbjct: 343 TSFDSSVTTVPSNSPATLNSYTTS 366


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = -2

Query: 279  LNSLSSRSLTAPLRSPCERRTCAAASTRVPPCLSKRETDCIFFPSFAREDASTSAARRSS 100
            L S   +S+   +   C+ R C   +T      S         P+   +D STS A  SS
Sbjct: 874  LTSRKGQSVRGTISVNCDYRPCLRLNTDNSSKQSSENVQSATDPTTPAKDNSTSNAETSS 933

Query: 99   PNSLIS 82
              S+IS
Sbjct: 934  ITSVIS 939


>SPAC23A1.03 |apt1||adenine phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +2

Query: 143 KEGKKMQSVSLLLKQGGTLVLAAAHVLLSQGDRKGAVKLLEESEFRYRPGVVGALCTLLC 322
           K G+++  V  +L  GGT + A   V    G+  G + LLE +  + R  ++    TLL 
Sbjct: 117 KPGQRVLIVDDILATGGTALAADELVTRLGGELVGHLFLLELTFLQGRKRLMAPTYTLLT 176

Query: 323 ADNEYVKASQ 352
             +E    S+
Sbjct: 177 GQDEAPDGSE 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,556
Number of Sequences: 5004
Number of extensions: 41568
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 840441776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)