Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_C08_e155_06.seq
         (1504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787...    31   2.4  
06_03_1105 - 27634787-27636025                                         31   3.1  
10_02_0137 - 5730778-5730873,5732137-5732334,5732413-5732625,573...    30   5.5  
02_04_0002 - 18825310-18825873                                         30   5.5  

>05_05_0230 -
           23476919-23477372,23477656-23477695,23478578-23478700,
           23479114-23479151,23479289-23479674,23479875-23481053,
           23481805-23481928,23482733-23482779
          Length = 796

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 22/90 (24%), Positives = 36/90 (40%)
 Frame = -2

Query: 318 SRVHSAPTTPGRYLNSLSSRSLTAPLRSPCERRTCAAASTRVPPCLSKRETDCIFFPSFA 139
           S V S PTTP R  +++ +   +     P   R+     TR       R +  +     A
Sbjct: 104 SSVSSRPTTPSRRSSTVVAPKQSIAASRPVPARSSTPVKTRPSTPTKTRPSTPVRTRQTA 163

Query: 138 REDASTSAARRSSPNSLISFTPSCRIXCXP 49
              + ++AAR +S  +    TP+ R    P
Sbjct: 164 NSTSDSAAARTTSAQNSRPSTPTSRSRAMP 193


>06_03_1105 - 27634787-27636025
          Length = 412

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -2

Query: 306 SAPT-TPGRYLNSLSSRSLTAPLRSPCERRTCAAASTRVPPCLSKRETDCIFFPSFARED 130
           SAP  TPGR +NS ++RSL   L+    R + A+AS      L +  +D     S A   
Sbjct: 176 SAPARTPGRAMNSTAARSLKLLLQRNNGRSSGASASELASAPLLRDSSDSEASLSLASSR 235

Query: 129 ASTSAARRSS 100
            S S++  SS
Sbjct: 236 FSLSSSSSSS 245


>10_02_0137 -
           5730778-5730873,5732137-5732334,5732413-5732625,
           5732748-5732870,5733726-5733841,5734530-5734897,
           5735498-5735649,5736557-5736715,5737773-5737946
          Length = 532

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 270 ASSGTAPELSG-RCALCSALITNTLRRLN 353
           +S G +  LSG RC +CSA ITN +R  N
Sbjct: 33  SSCGKSMALSGARCLVCSAPITNLIREYN 61


>02_04_0002 - 18825310-18825873
          Length = 187

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 297 TTPGRYLNSLSSRSLTAPLRSPCERRTCAAASTRVPPC-LSKRETDCIFFPS 145
           T  GR+L  ++ RSL A L S         A+   PPC L++RE  C   PS
Sbjct: 38  TKRGRFLGRVARRSLAALLLSSGGGGKPCLATAPWPPCALAEREFSCSNSPS 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,940,053
Number of Sequences: 37544
Number of extensions: 340682
Number of successful extensions: 982
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4814874820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)