Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030712_C08_e155_06.seq
(1504 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U81554-1|AAB66908.1| 239|Homo sapiens CaM kinase II isoform pro... 50 3e-05
BX537991-1|CAD97950.1| 626|Homo sapiens hypothetical protein pr... 50 3e-05
BC105583-1|AAI05584.1| 560|Homo sapiens SRP72 protein protein. 50 3e-05
BC046143-1|AAH46143.1| 559|Homo sapiens Similar to signal recog... 50 3e-05
BC040134-1|AAH40134.1| 559|Homo sapiens SRP72 protein protein. 50 3e-05
BC032609-1|AAH32609.1| 559|Homo sapiens SRP72 protein protein. 50 3e-05
BC017057-1|AAH17057.1| 559|Homo sapiens SRP72 protein protein. 50 3e-05
AF077019-1|AAC27324.1| 671|Homo sapiens signal recognition part... 50 3e-05
AF069765-1|AAC97490.1| 671|Homo sapiens signal recognition part... 50 3e-05
AF038851-1|AAQ13423.1| 671|Homo sapiens putative signal recogni... 50 3e-05
>U81554-1|AAB66908.1| 239|Homo sapiens CaM kinase II isoform
protein.
Length = 239
Score = 49.6 bits (113), Expect = 3e-05
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Frame = +2
Query: 119 LVEASSLAKEGKKMQSVSLLLK-------QGGTLVLAAAHVLLSQGDRKGAVKLLEE-SE 274
L++A+ L +E + +++ LL + + L A + +SQG+ A +L E
Sbjct: 28 LIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEE 87
Query: 275 FRYRPGVVGALCTLLCADNEYVKASQLFTDVYQHYKDDQLFASL-CXXXXXXXXXXXXXX 451
+++PG+V AL T+ + + A ++FT Q Y++ Q +
Sbjct: 88 LKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKSPXHLSLIREAANFKLKYG 147
Query: 452 XXXXXXXXXXXXXXXXPXDKRSLARLVKALAXASPDRARRLAETLPPLEAXS 607
P D +LA+L+ A + P++A+ L++ LP ++ S
Sbjct: 148 RKKEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMS 199
>BX537991-1|CAD97950.1| 626|Homo sapiens hypothetical protein
protein.
Length = 626
Score = 49.6 bits (113), Expect = 3e-05
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Frame = +2
Query: 119 LVEASSLAKEGKKMQSVSLLLK-------QGGTLVLAAAHVLLSQGDRKGAVKLLEE-SE 274
L++A+ L +E + +++ LL + + L A + +SQG+ A +L E
Sbjct: 287 LIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEE 346
Query: 275 FRYRPGVVGALCTLLCADNEYVKASQLFTDVYQHYKDDQ-LFASLCXXXXXXXXXXXXXX 451
+++PG+V AL T+ + + A ++FT Q Y++ Q +
Sbjct: 347 LKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYG 406
Query: 452 XXXXXXXXXXXXXXXXPXDKRSLARLVKALAXASPDRARRLAETLPPLEAXS 607
P D +LA+L+ A + P++A+ L++ LP ++ S
Sbjct: 407 RKKEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMS 458
>BC105583-1|AAI05584.1| 560|Homo sapiens SRP72 protein protein.
Length = 560
Score = 49.6 bits (113), Expect = 3e-05
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Frame = +2
Query: 119 LVEASSLAKEGKKMQSVSLLLK-------QGGTLVLAAAHVLLSQGDRKGAVKLLEE-SE 274
L++A+ L +E + +++ LL + + L A + +SQG+ A +L E
Sbjct: 342 LIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEE 401
Query: 275 FRYRPGVVGALCTLLCADNEYVKASQLFTDVYQHYKDDQ-LFASLCXXXXXXXXXXXXXX 451
+++PG+V AL T+ + + A ++FT Q Y++ Q +
Sbjct: 402 LKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKSPAHLSLIIEAANFKLKYG 461
Query: 452 XXXXXXXXXXXXXXXXPXDKRSLARLVKALAXASPDRARRLAETLPPLEAXS 607
P D +LA+L+ A + P++A+ L++ LP ++ S
Sbjct: 462 RKKEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMS 513
>BC046143-1|AAH46143.1| 559|Homo sapiens Similar to signal
recognition particle 72kDa protein.
Length = 559
Score = 49.6 bits (113), Expect = 3e-05
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Frame = +2
Query: 119 LVEASSLAKEGKKMQSVSLLLK-------QGGTLVLAAAHVLLSQGDRKGAVKLLEE-SE 274
L++A+ L +E + +++ LL + + L A + +SQG+ A +L E
Sbjct: 342 LIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEE 401
Query: 275 FRYRPGVVGALCTLLCADNEYVKASQLFTDVYQHYKDDQ-LFASLCXXXXXXXXXXXXXX 451
+++PG+V AL T+ + + A ++FT Q Y++ Q +
Sbjct: 402 LKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYG 461
Query: 452 XXXXXXXXXXXXXXXXPXDKRSLARLVKALAXASPDRARRLAETLPPLEAXS 607
P D +LA+L+ A + P++A+ L++ LP ++ S
Sbjct: 462 RKKEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMS 513
>BC040134-1|AAH40134.1| 559|Homo sapiens SRP72 protein protein.
Length = 559
Score = 49.6 bits (113), Expect = 3e-05
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Frame = +2
Query: 119 LVEASSLAKEGKKMQSVSLLLK-------QGGTLVLAAAHVLLSQGDRKGAVKLLEE-SE 274
L++A+ L +E + +++ LL + + L A + +SQG+ A +L E
Sbjct: 342 LIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEE 401
Query: 275 FRYRPGVVGALCTLLCADNEYVKASQLFTDVYQHYKDDQ-LFASLCXXXXXXXXXXXXXX 451
+++PG+V AL T+ + + A ++FT Q Y++ Q +
Sbjct: 402 LKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYG 461
Query: 452 XXXXXXXXXXXXXXXXPXDKRSLARLVKALAXASPDRARRLAETLPPLEAXS 607
P D +LA+L+ A + P++A+ L++ LP ++ S
Sbjct: 462 RKKEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMS 513
>BC032609-1|AAH32609.1| 559|Homo sapiens SRP72 protein protein.
Length = 559
Score = 49.6 bits (113), Expect = 3e-05
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Frame = +2
Query: 119 LVEASSLAKEGKKMQSVSLLLK-------QGGTLVLAAAHVLLSQGDRKGAVKLLEE-SE 274
L++A+ L +E + +++ LL + + L A + +SQG+ A +L E
Sbjct: 342 LIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEE 401
Query: 275 FRYRPGVVGALCTLLCADNEYVKASQLFTDVYQHYKDDQ-LFASLCXXXXXXXXXXXXXX 451
+++PG+V AL T+ + + A ++FT Q Y++ Q +
Sbjct: 402 LKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYG 461
Query: 452 XXXXXXXXXXXXXXXXPXDKRSLARLVKALAXASPDRARRLAETLPPLEAXS 607
P D +LA+L+ A + P++A+ L++ LP ++ S
Sbjct: 462 RKKEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMS 513
>BC017057-1|AAH17057.1| 559|Homo sapiens SRP72 protein protein.
Length = 559
Score = 49.6 bits (113), Expect = 3e-05
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Frame = +2
Query: 119 LVEASSLAKEGKKMQSVSLLLK-------QGGTLVLAAAHVLLSQGDRKGAVKLLEE-SE 274
L++A+ L +E + +++ LL + + L A + +SQG+ A +L E
Sbjct: 342 LIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEE 401
Query: 275 FRYRPGVVGALCTLLCADNEYVKASQLFTDVYQHYKDDQ-LFASLCXXXXXXXXXXXXXX 451
+++PG+V AL T+ + + A ++FT Q Y++ Q +
Sbjct: 402 LKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYG 461
Query: 452 XXXXXXXXXXXXXXXXPXDKRSLARLVKALAXASPDRARRLAETLPPLEAXS 607
P D +LA+L+ A + P++A+ L++ LP ++ S
Sbjct: 462 RKKEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMS 513
>AF077019-1|AAC27324.1| 671|Homo sapiens signal recognition
particle 72 protein.
Length = 671
Score = 49.6 bits (113), Expect = 3e-05
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Frame = +2
Query: 119 LVEASSLAKEGKKMQSVSLLLK-------QGGTLVLAAAHVLLSQGDRKGAVKLLEE-SE 274
L++A+ L +E + +++ LL + + L A + +SQG+ A +L E
Sbjct: 342 LIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEE 401
Query: 275 FRYRPGVVGALCTLLCADNEYVKASQLFTDVYQHYKDDQ-LFASLCXXXXXXXXXXXXXX 451
+++PG+V AL T+ + + A ++FT Q Y++ Q +
Sbjct: 402 LKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYG 461
Query: 452 XXXXXXXXXXXXXXXXPXDKRSLARLVKALAXASPDRARRLAETLPPLEAXS 607
P D +LA+L+ A + P++A+ L++ LP ++ S
Sbjct: 462 RKKEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMS 513
>AF069765-1|AAC97490.1| 671|Homo sapiens signal recognition
particle 72 protein.
Length = 671
Score = 49.6 bits (113), Expect = 3e-05
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Frame = +2
Query: 119 LVEASSLAKEGKKMQSVSLLLK-------QGGTLVLAAAHVLLSQGDRKGAVKLLEE-SE 274
L++A+ L +E + +++ LL + + L A + +SQG+ A +L E
Sbjct: 342 LIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEE 401
Query: 275 FRYRPGVVGALCTLLCADNEYVKASQLFTDVYQHYKDDQ-LFASLCXXXXXXXXXXXXXX 451
+++PG+V AL T+ + + A ++FT Q Y++ Q +
Sbjct: 402 LKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYG 461
Query: 452 XXXXXXXXXXXXXXXXPXDKRSLARLVKALAXASPDRARRLAETLPPLEAXS 607
P D +LA+L+ A + P++A+ L++ LP ++ S
Sbjct: 462 RKKEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMS 513
>AF038851-1|AAQ13423.1| 671|Homo sapiens putative signal
recognition particle protein.
Length = 671
Score = 49.6 bits (113), Expect = 3e-05
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Frame = +2
Query: 119 LVEASSLAKEGKKMQSVSLLLK-------QGGTLVLAAAHVLLSQGDRKGAVKLLEE-SE 274
L++A+ L +E + +++ LL + + L A + +SQG+ A +L E
Sbjct: 342 LIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEE 401
Query: 275 FRYRPGVVGALCTLLCADNEYVKASQLFTDVYQHYKDDQ-LFASLCXXXXXXXXXXXXXX 451
+++PG+V AL T+ + + A ++FT Q Y++ Q +
Sbjct: 402 LKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKSPAHLSLIREAANFKLKYG 461
Query: 452 XXXXXXXXXXXXXXXXPXDKRSLARLVKALAXASPDRARRLAETLPPLEAXS 607
P D +LA+L+ A + P++A+ L++ LP ++ S
Sbjct: 462 RKKEAISDLQQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMS 513
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,649,608
Number of Sequences: 237096
Number of extensions: 1785316
Number of successful extensions: 4344
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4341
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22307317538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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