Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030712_C08_e155_06.seq
         (1504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80840-12|AAB37925.1|  694|Caenorhabditis elegans Hypothetical p...    34   0.23 

>U80840-12|AAB37925.1|  694|Caenorhabditis elegans Hypothetical
           protein F08D12.1 protein.
          Length = 694

 Score = 34.3 bits (75), Expect = 0.23
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +2

Query: 80  KLIKEFGEERRAALVEASSLAKEGKKMQSVSLLLKQGGTLVLAAAHVLLSQGDRKGAVKL 259
           +L+ +FG  +  AL+EA+   K G    ++ +L        LA  HVLL+ G    AV  
Sbjct: 381 ELVAKFGSSKDVALIEATLHFKMGDAEAALKVLAGSDLEQSLARLHVLLNAGRLPEAVGA 440

Query: 260 LEESEFRYRPGVVGAL-CTLLCADN 331
           + +     + G    L  TL+ AD+
Sbjct: 441 IRDLPISGKLGASSLLTSTLIAADS 465


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,525,419
Number of Sequences: 27780
Number of extensions: 259850
Number of successful extensions: 682
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4329178048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)